Merge pull request #120 from nextstrain/keep-yfv-enabled #561
genehackci.yaml
on: push
test-pathogen-repo-build-aws-batch
/
workflow-context
2s
test-pathogen-repo-ci
/
configuration
3s
test-pathogen-repo-ci
/
workflow-context
5s
test-docs-ci-conda
/
build
1m 50s
test-docs-ci-pip
/
build
2m 19s
lint
5s
Matrix: test-pathogen-repo-build
Matrix: test-setup-nextstrain-cli
test-pathogen-repo-build-aws-batch
/
run-build
5m 32s
Matrix: test-pathogen-repo-ci / nextstrain-build
test-pathogen-repo-build-aws-batch
/
wait-conclusion
2s
test-pathogen-repo-build-aws-batch
/
cancellation
0s
test-pathogen-repo-build-aws-batch-id-output
/
workflow-context
4s
test-pathogen-repo-build-aws-batch-id-output
/
run-build
18s
test-pathogen-repo-build-aws-batch-id-output
/
wait-1
7s
test-pathogen-repo-build-aws-batch-id-output
/
wait-2
0s
test-pathogen-repo-build-aws-batch-id-output
/
wait-3
0s
test-pathogen-repo-build-aws-batch-id-output
/
wait-4
0s
test-pathogen-repo-build-aws-batch-id-output
/
wait-conclusion
4s
test-pathogen-repo-build-aws-batch-id-output
/
cancellation
0s
Annotations
1 error and 25 warnings
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test-pathogen-repo-build (conda) / run-build
Process completed with exit code 1.
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test-pathogen-repo-build-aws-batch / workflow-context
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-build (docker) / workflow-context
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-ci / configuration
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-build (conda) / workflow-context
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-ci / workflow-context
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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lint
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-setup-nextstrain-cli (os=ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-build (docker) / run-build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test-pathogen-repo-build (docker) / wait-conclusion
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-docs-ci-conda / build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-docs-ci-conda / build
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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test-docs-ci-conda / build
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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test-docs-ci-conda / build
/usr/share/miniconda/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead.
action(self, namespace, argument_values, option_string)
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test-pathogen-repo-ci / build (docker)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-docs-ci-pip / build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-build (conda) / run-build
No files were found with the provided path: build.log
auspice/
results/
benchmarks/
logs/
.snakemake/log/. No artifacts will be uploaded.
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test-pathogen-repo-build (conda) / wait-conclusion
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-build-aws-batch / run-build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-build-aws-batch / wait-1
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-build-aws-batch / wait-conclusion
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-build-aws-batch-id-output / workflow-context
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test-pathogen-repo-ci / build (conda)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test-pathogen-repo-build-aws-batch-id-output / run-build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test-pathogen-repo-build-aws-batch-id-output / wait-1
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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test-pathogen-repo-build-aws-batch-id-output / wait-conclusion
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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build-output-aws-batch
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106 KB |
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build-output-aws-batch-reattached
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105 KB |
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build-output-docker
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103 KB |
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outputs-test-pathogen-repo-ci-conda
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745 KB |
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outputs-test-pathogen-repo-ci-docker
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745 KB |
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