bar #93
Workflow file for this run
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| name: CI | |
| on: | |
| pull_request: | |
| push: | |
| workflow_dispatch: | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Set up MicroMamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| cache-environment: true | |
| - name: Unit test with code coverage | |
| shell: bash -l {0} | |
| run: python -m pytest -vv --cov=postprocessing --cov=scripts --cov-report=xml --cov-report=term | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| integration-tests: | |
| runs-on: ubuntu-latest | |
| needs: tests | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Set up MicroMamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| cache-environment: true | |
| - name: Start docker containers | |
| run: docker-compose -f tests/integration/docker-compose.yml up --build -d | |
| - name: Sleep, wait for containers to start up | |
| run: sleep 2 | |
| - name: Run integration tests | |
| shell: bash -l {0} | |
| run: python -m pytest tests/integration | |
| - name: Stop but dont remove docker containers | |
| # Stopping the containers allows the code coverage to be written to disk | |
| run: docker-compose -f tests/integration/docker-compose.yml stop | |
| - name: Copy code coverage out of docker container | |
| run: docker cp integration_post_processing_agent_1:/opt/postprocessing/ /tmp/ | |
| - name: Combine and show code coverage | |
| shell: bash -l {0} | |
| run: | | |
| cd /tmp/postprocessing | |
| coverage combine | |
| coverage xml | |
| cp coverage.xml $OLDPWD | |
| coverage report | |
| - name: Bring down docker containers completely now | |
| # This will completely remove the containers | |
| run: docker-compose -f tests/integration/docker-compose.yml down | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| rpm: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Build RPM inside Docker | |
| run: | | |
| docker build --tag postprocess -f Dockerfile . | |
| fname=`docker run --name postprocess postprocess ls /root/rpmbuild/RPMS/noarch` | |
| docker cp postprocess:/root/rpmbuild/RPMS/noarch/$fname . | |
| one=${fname#*postprocessing-} | |
| two=${one%.noarch*} | |
| echo "::set-output name=version::$two" | |
| echo "::set-output name=fname::$fname" | |
| continue-on-error: false | |
| # now run a couple integration test with RPM installed package | |
| - name: Set up MicroMamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| cache-environment: true | |
| - name: Start docker containers | |
| run: docker-compose -f tests/integration/docker-compose-rpm.yml up --build -d | |
| - name: Sleep, wait for containers to start up | |
| run: sleep 2 | |
| - name: Run integration tests | |
| shell: bash -l {0} | |
| run: python -m pytest -k "test_heartbeat or test_missing_data" | |
| - name: Bring down docker containers | |
| run: docker-compose -f tests/integration/docker-compose-rpm.yml down | |
| wheel: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Set up MicroMamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| cache-environment: true | |
| - name: Build wheel | |
| shell: bash -l {0} | |
| run: python -m build --wheel |