GitHub action unittest #59

	name: CI

	on:
	workflow_dispatch:
	pull_request:
	push:
	branches:
	- master

	jobs:
	tests:
	runs-on: self-hosted
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v3
	- name: Set up Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	channels: conda-forge,defaults,mantid
	auto-update-conda: true
	miniforge-version: latest
	python-version: "3.8"
	environment-file: environment.yml
	activate-environment: liquid-ref
	- name: Restore cached conda environment
	id: cache-load
	uses: actions/cache/restore@v3
	with:
	path: /usr/share/miniconda/envs/liquid-ref
	key: ${{ runner.os }}-conda-${{ hashFiles('environment.yml') }}
	- name: Load Environment
	if: steps.cache-load.outputs.cache-hit != 'true'
	run: \|
	mamba env update --file environment.yml --prune
	- name: Start xvfb daemon
	run: \|
	/sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -ac -screen 0 1280x1024x16
	- name: Test with pytest
	run: \|
	dpkg -l git-lfs
	git submodule add https://code.ornl.gov/sns-hfir-scse/infrastructure/test-data/liquidsreflectometer-data.git tests/data/liquidsreflectometer-data
	git -C tests/data/liquidsreflectometer-data/ lfs install
	git -C tests/data/liquidsreflectometer-data/ pull
	git submodule update
	ls -al tests/data/liquidsreflectometer-data/nexus/
	python -m pytest --cov=reduction --cov=scripts --cov-report=xml --cov-report=term
	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v3
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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