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Find optimal centre of rotations #12

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lauraporta opened this issue Jul 19, 2024 · 2 comments
Closed

Find optimal centre of rotations #12

lauraporta opened this issue Jul 19, 2024 · 2 comments

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@lauraporta
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lauraporta commented Jul 19, 2024

Is your feature request related to a problem? Please describe.
The centre of rotation is not aligned with the centre of the image. It becomes very clear when doing np.max(original_video, axis=0)

Screenshot 2024-06-18 at 17 19 45

Describe the solution you'd like
I want a method to be added in the pipeline that finds this centre.

Describe alternatives you've considered
I think there are two options:
A) Fit an ellipse to the image:
- take the max projection (np.max())
- set a threshold and get binary image
- fit ellipse (with scikit-image)
B) Use the two most bright cells, find their contours, and use geometry

@lauraporta
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Nice progress on this problem was done by @DhimanS07 in it's project

@lauraporta lauraporta mentioned this issue Sep 19, 2024
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@lauraporta lauraporta linked a pull request Sep 19, 2024 that will close this issue
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@lauraporta
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Solved in #30

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