code_test_and_deploy.yml

name: tests

on:
  push:
    branches:
      - main
    tags:
      - '*'
  pull_request:

jobs:
  linting:
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/lint@v2

  test:
    needs: [linting]
    name: ${{ matrix.os }} py${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}

    defaults:
      run:
        shell: bash -l {0}

    strategy:
      matrix:
        os: [ubuntu-latest]  # TODO: add these back in after tests... windows-latest, macos-latest, macos-14,
        python-version: ["3.8", "3.9", "3.10", "3.11"]

    steps:
      - uses: actions/checkout@v4
      - name: Set up Conda
        uses: conda-incubator/setup-miniconda@v3
        with:
          python-version: ${{ matrix.python-version }}
          auto-update-conda: true
          channels: conda-forge
          activate-environment: "true"
      - name: Install RClone
        run: |
          conda activate true
          conda install -c conda-forge rclone
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install .[dev]
      - name: Shutdown Ubuntu MySQL (SUDO)  # free up port  3306 for ssh tests: https://github.com/orgs/community/discussions/25550
        run: sudo service mysql stop # Shutdown the Default MySQL, "sudo" is necessary, please not remove it
      - name: Test
        run: pytest -k test_combinations_ssh_transfer

  build_sdist_wheels:
    name: Build source distribution
    needs: [test]
    if: github.event_name == 'push' && github.ref_type == 'tag'
    runs-on: ubuntu-latest
    steps:
    - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2


  upload_all:
    name: Publish build distributions
    needs: [build_sdist_wheels]
    runs-on: ubuntu-latest
    steps:
    - uses: neuroinformatics-unit/actions/upload_pypi@v2
      with:
        secret-pypi-key: ${{ secrets.TWINE_API_KEY }}