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Reorganized files #34

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Reorganized files #34

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d2e1d7d
test
jimmy-penn May 15, 2024
5fa528d
Reorganize files
jimmy-penn May 15, 2024
4d4cbf6
Add medium testing
jimmy-penn May 15, 2024
1e9704f
Minor changes
jimmy-penn May 21, 2024
3c87009
Add functions to read AFs from subpopulations
jimmy-penn May 21, 2024
ecbd0c5
Add functions to calculate additional scores for subcontinental popul…
jimmy-penn May 23, 2024
19a7aa2
Add code to calculate scores for clustering African subpopulations.
jimmy-penn May 31, 2024
23ff431
Normalized newly added scores for clustering subcontinental populations.
jimmy-penn Jun 13, 2024
e849c17
Added code to save and display raw subcontinental population scores.
jimmy-penn Jun 14, 2024
a2c58e0
Fixed a bug. Removed GD4 and replaced it with a normalized score GL1.…
jimmy-penn Jun 21, 2024
0d51447
Modified code to take new list of global level reference populations
jimmy-penn Aug 27, 2024
9a6058b
Added code to calculate scores for EA subpopulations
jimmy-penn Sep 5, 2024
d7db376
Modified code to save memory space. Fixed a bug with duplicated SNP IDs.
jimmy-penn Oct 8, 2024
7db1a77
Code to check format of ancestry SNP file
jimmy-penn Oct 8, 2024
46c524d
Some minor changes
jimmy-penn Oct 8, 2024
fb38bf9
Swithed EA1 and EA3
jimmy-penn Nov 11, 2024
96b17b2
Reimplement vcf parser using htslib
jimmy-penn Nov 18, 2024
346c79b
Modified PLINK parser to allow reading a chunk of samples
jimmy-penn Nov 19, 2024
0acdea6
Optimize memory use for both VCF and PLINK input
jimmy-penn Nov 21, 2024
da47fd4
Bug fixes and minor improvements
jimmy-penn Nov 21, 2024
65d4165
Add code to calculate heterozy rate for each sample
jimmy-penn Nov 22, 2024
64752e2
Added raw Pe, Pf, Pa scores
jimmy-penn Nov 26, 2024
a19910a
Add code to take user-specified memory size, sample block size, threads
jimmy-penn Nov 27, 2024
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78 changes: 0 additions & 78 deletions Build Announcements/151/README.md
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66 changes: 0 additions & 66 deletions Build Announcements/152/README.md
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44 changes: 0 additions & 44 deletions Frequency Project/README.md
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