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Merge pull request galaxyproject#771 from Delphine-L/singlecell
Add single cell tools to match https://singlecell.usegalaxy.eu/
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| tool_panel_section_label: HCA-Scanpy | ||
| tools: | ||
| - name: seurat_plot | ||
| owner: ebi-gxa | ||
| - name: scanpy_integrate_bbknn | ||
| owner: ebi-gxa | ||
| - name: scanpy_integrate_combat | ||
| owner: ebi-gxa | ||
| - name: scanpy_integrate_mnn | ||
| owner: ebi-gxa | ||
| - name: scanpy_plot_scrublet | ||
| owner: ebi-gxa | ||
| - name: scanpy_multiplet_scrublet | ||
| owner: ebi-gxa | ||
| - name: seurat_run_umap | ||
| owner: ebi-gxa |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,47 @@ | ||
| install_repository_dependencies: true | ||
| install_resolver_dependencies: false | ||
| install_tool_dependencies: false | ||
| tool_panel_section_label: HCA-Scanpy | ||
| tools: | ||
| - name: seurat_plot | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 95d79f1134f0 | ||
| tool_panel_section_id: hca_scanpy | ||
| tool_panel_section_label: HCA-Scanpy | ||
| - name: scanpy_integrate_bbknn | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - c9da9192eee5 | ||
| tool_panel_section_id: hca_scanpy | ||
| tool_panel_section_label: HCA-Scanpy | ||
| - name: scanpy_integrate_combat | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 3c47bc560688 | ||
| tool_panel_section_id: hca_scanpy | ||
| tool_panel_section_label: HCA-Scanpy | ||
| - name: scanpy_integrate_mnn | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - ff6decc0f432 | ||
| tool_panel_section_id: hca_scanpy | ||
| tool_panel_section_label: HCA-Scanpy | ||
| - name: scanpy_plot_scrublet | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 6f5509cf3176 | ||
| tool_panel_section_id: hca_scanpy | ||
| tool_panel_section_label: HCA-Scanpy | ||
| - name: scanpy_multiplet_scrublet | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - 53ce0e336840 | ||
| tool_panel_section_id: hca_scanpy | ||
| tool_panel_section_label: HCA-Scanpy | ||
| - name: seurat_run_umap | ||
| owner: ebi-gxa | ||
| revisions: | ||
| - b9424c715a0d | ||
| tool_panel_section_id: hca_scanpy | ||
| tool_panel_section_label: HCA-Scanpy |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,120 @@ | ||
| tool_panel_section_label: HiCExplorer | ||
| tools: | ||
| - name: hicexplorer_chicaggregatestatistic | ||
| owner: bgruening | ||
| - name: hicexplorer_chicdifferentialtest | ||
| owner: bgruening | ||
| - name: hicexplorer_chicexportdata | ||
| owner: bgruening | ||
| - name: hicexplorer_chicplotviewpoint | ||
| owner: bgruening | ||
| - name: hicexplorer_chicqualitycontrol | ||
| owner: bgruening | ||
| - name: hicexplorer_chicsignificantinteractions | ||
| owner: bgruening | ||
| - name: hicexplorer_chicviewpoint | ||
| owner: bgruening | ||
| - name: hicexplorer_chicqualitycontrol | ||
| owner: bgruening | ||
| - name: hicexplorer_chicsignificantinteractions | ||
| owner: bgruening | ||
| - name: hicexplorer_chicviewpoint | ||
| owner: bgruening | ||
| - name: hicexplorer_chicviewpointbackgroundmodel | ||
| owner: bgruening | ||
| - name: hicexplorer_hicadjustmatrix | ||
| owner: bgruening | ||
| - name: hicexplorer_hicaggregatecontacts | ||
| owner: bgruening | ||
| - name: hicexplorer_hicaverageregions | ||
| owner: bgruening | ||
| - name: hicexplorer_hicbuildmatrix | ||
| owner: bgruening | ||
| - name: hicexplorer_hiccomparematrices | ||
| owner: bgruening | ||
| - name: hicexplorer_hiccompartmentspolarization | ||
| owner: bgruening | ||
| - name: hicexplorer_hicconvertformat | ||
| owner: bgruening | ||
| - name: hicexplorer_hiccorrectmatrix | ||
| owner: bgruening | ||
| - name: hicexplorer_hiccorrelate | ||
| owner: bgruening | ||
| - name: hicexplorer_hicdetectloops | ||
| owner: bgruening | ||
| - name: hicexplorer_hicdifferentialtad | ||
| owner: bgruening | ||
| - name: hicexplorer_hicfindrestrictionsites | ||
| owner: bgruening | ||
| - name: hicexplorer_hicfindtads | ||
| owner: bgruening | ||
| - name: hicexplorer_hichyperoptdetectloops | ||
| owner: bgruening | ||
| - name: hicexplorer_hicinfo | ||
| owner: bgruening | ||
| - name: hicexplorer_hicinterintratad | ||
| owner: bgruening | ||
| - name: hicexplorer_hicmergedomains | ||
| owner: bgruening | ||
| - name: hicexplorer_hicmergeloops | ||
| owner: bgruening | ||
| - name: hicexplorer_hicmergematrixbins | ||
| owner: bgruening | ||
| - name: hicexplorer_hicnormalize | ||
| owner: bgruening | ||
| - name: hicexplorer_hicpca | ||
| owner: bgruening | ||
| - name: hicexplorer_hicplotaverageregions | ||
| owner: bgruening | ||
| - name: hicexplorer_hicplotdistvscounts | ||
| owner: bgruening | ||
| - name: hicexplorer_hicplotmatrix | ||
| owner: bgruening | ||
| - name: hicexplorer_hicplotsvl | ||
| owner: bgruening | ||
| - name: hicexplorer_hicplotviewpoint | ||
| owner: bgruening | ||
| - name: hicexplorer_hicquickqc | ||
| owner: bgruening | ||
| - name: hicexplorer_hicsummatrices | ||
| owner: bgruening | ||
| - name: hicexplorer_hictadclassifier | ||
| owner: bgruening | ||
| - name: hicexplorer_hictraintadclassifier | ||
| owner: bgruening | ||
| - name: hicexplorer_hictransform | ||
| owner: bgruening | ||
| - name: hicexplorer_hicvalidatelocations | ||
| owner: bgruening | ||
| - name: schicexplorer_schicadjustmatrix | ||
| owner: iuc | ||
| - name: schicexplorer_schiccluster | ||
| owner: iuc | ||
| - name: schicexplorer_schicclustercompartments | ||
| owner: iuc | ||
| - name: schicexplorer_schicclusterminhash | ||
| owner: iuc | ||
| - name: schicexplorer_schicclustersvl | ||
| owner: iuc | ||
| - name: schicexplorer_schicconsensusmatrices | ||
| owner: iuc | ||
| - name: schicexplorer_schiccorrectmatrices | ||
| owner: iuc | ||
| - name: schicexplorer_schiccreatebulkmatrix | ||
| owner: iuc | ||
| - name: schicexplorer_schicdemultiplex | ||
| owner: iuc | ||
| - name: schicexplorer_schicinfo | ||
| owner: iuc | ||
| - name: schicexplorer_schicmergematrixbins | ||
| owner: iuc | ||
| - name: schicexplorer_schicmergetoscool | ||
| owner: iuc | ||
| - name: schicexplorer_schicnormalize | ||
| owner: iuc | ||
| - name: schicexplorer_schicplotclusterprofiles | ||
| owner: iuc | ||
| - name: schicexplorer_schicplotconsensusmatrices | ||
| owner: iuc | ||
| - name: schicexplorer_schicqualitycontrol | ||
| owner: iuc |
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