Merge pull request galaxyproject#877 from galaxyproject/create-pull-r…

…equest/patch

Update all repos 2024-11-23

usegalaxy.org/annotation.yml.lock

@@ -66,6 +66,7 @@ tools:
   - 94170eee0ad8
   - cf13a1e03e5b
   - e4bd1e99bacf
+  - e5c372c91e46
   - ea8146ee148f
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
@@ -206,6 +207,7 @@ tools:
   - 7fa335454224
   - 908c494fa84e
   - 9ec3ffd77b6b
+  - e0de8669b340
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: optitype
@@ -269,6 +271,7 @@ tools:
   - 4839e590cb26
   - 51dd22484644
   - 809dfc93d593
+  - 8cb134b8c1a5
   - ac8250086ac3
   - ba6f87115e13
   - c2656b729ee9
@@ -378,6 +381,7 @@ tools:
   revisions:
   - 53b22b7dff19
   - c0a0e79d7196
+  - c5f2ce99da69
   - fc6252e78d5b
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
@@ -386,6 +390,7 @@ tools:
   revisions:
   - 0ceb9fb0f4ce
   - 1f89eeba299a
+  - 54acd5139cab
   - 948903a8555d
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation

usegalaxy.org/assembly.yml.lock

@@ -6,6 +6,7 @@ tools:
 - name: blobtoolkit
   owner: bgruening
   revisions:
+  - '392811378515'
   - 53dd00a4ab68
   - 8c2167481e72
   tool_panel_section_id: assembly
@@ -32,6 +33,7 @@ tools:
   - 72472698a2df
   - 7594365c546b
   - 875d0f36d66f
+  - a3b35edea53a
   - ebb0dcdb621a
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
@@ -239,6 +241,7 @@ tools:
   - 284a1cb82b61
   - 366a11d316a7
   - 3f7be05a1597
+  - 5161f204ba63
   - 5bec28269d95
   - 5f625c63b8bc
   - 6505bd37670d
@@ -323,13 +326,15 @@ tools:
   - 511e5e3cd55e
   - 79b48f02db49
   - 8fef980d48b5
+  - c6cec5ab35c1
   - dfb8a4497339
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: pretext_snapshot
   owner: iuc
   revisions:
   - 0a10fddd97d2
+  - 26f2fe7e53a1
   - 44c66e8d21e6
   - 6c571966cfb9
   - 7c9417381ad5
@@ -355,6 +360,7 @@ tools:
   - 6ec1b853c8fd
   - 8ccbf07a5433
   - ad1149b4f795
+  - f4a3eff8ab85
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: yahs

usegalaxy.org/bbtools.yml.lock

@@ -12,6 +12,7 @@ tools:
   - 7beb76ffbc0f
   - bf0cb5dd02f2
   - d1f62024a08b
+  - d58c27d2c5a7
   tool_panel_section_id: bbtools
   tool_panel_section_label: BBTools
 - name: bbtools_bbmap
@@ -22,13 +23,15 @@ tools:
   - 456d8ebb6a28
   - 517464809c33
   - 7f19559b8b55
+  - 8015d7ab8357
   - b394de3cf6e8
   tool_panel_section_id: bbtools
   tool_panel_section_label: BBTools
 - name: bbtools_bbmerge
   owner: iuc
   revisions:
   - 1af48f9cc27b
+  - 1bb2b5b52030
   - 5d8b93c0731f
   - 6d084528a6f1
   - 82ced0e47b9d
@@ -45,11 +48,13 @@ tools:
   - 3fc12917bbdb
   - 770bceda7785
   - a9329b77db78
+  - e607b61a68ad
   tool_panel_section_id: bbtools
   tool_panel_section_label: BBTools
 - name: bbtools_callvariants
   owner: iuc
   revisions:
+  - 3854db061e6e
   - 66b138a2e74c
   - 7e041c120b96
   - adec76ebc868
@@ -65,6 +70,7 @@ tools:
   - 20aef74d20a1
   - 654c9da47f74
   - cbc75076778f
+  - ce13b4678f18
   - e4fb34b79770
   - eaeb387d1244
   tool_panel_section_id: bbtools

usegalaxy.org/biodiversity_data_exploration.yml.lock

@@ -8,5 +8,6 @@ tools:
   revisions:
   - 393957ecc97d
   - 4e7c1fb5e894
+  - dc187fe78055
   tool_panel_section_id: biodiversity_data_exploration
   tool_panel_section_label: Biodiversity data exploration

usegalaxy.org/convert_formats.yml.lock

@@ -165,6 +165,7 @@ tools:
   - 356dc923f8d3
   - 3c6f9e8a4c17
   - 8067dfa00ed2
+  - e9bbe2f71784
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: bed_to_protein_map
@@ -229,11 +230,13 @@ tools:
   revisions:
   - 98704d357ede
   - a2f83a375bf2
+  - fa49730d1d4b
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: bam2fastx
   owner: iuc
   revisions:
+  - 0bfdf46e5e31
   - 7f7f2ee03430
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats

usegalaxy.org/data_managers.yml.lock

@@ -106,6 +106,7 @@ tools:
   - 539b008cfe1c
   - 90b4d4f0a3a4
   - e4b4837f06f5
+  - e9ee4d074d5d
   tool_panel_section_id: data_managers
   tool_panel_section_label: Data Managers
 - name: data_manager_build_bracken_database

usegalaxy.org/fasta_fastq.yml.lock

@@ -45,6 +45,7 @@ tools:
   revisions:
   - 1d8fe9bc4cb0
   - 65b93b623c77
+  - a626e8c0e1ba
   - c59d48774d03
   - d60c3f704da0
   - dbf9c561ef29

usegalaxy.org/fetch_sequences_alignments.yml.lock

@@ -7,6 +7,7 @@ tools:
   owner: iuc
   revisions:
   - 5cc8e93ee98f
+  - 80414c33a59a
   - e400dcbc60d0
   tool_panel_section_id: fetch_sequences_alignments
   tool_panel_section_label: Fetch Sequences/Alignments

usegalaxy.org/filter_and_sort.yml.lock

@@ -9,6 +9,7 @@ tools:
   - 00b3da7776a0
   - 2488bcddaf14
   - 61946b8bd43b
+  - bae6cba73e32
   tool_panel_section_id: filter_and_sort
   tool_panel_section_label: Filter and Sort
 - name: sample_seqs

usegalaxy.org/graph_display_data.yml.lock

@@ -69,6 +69,7 @@ tools:
   owner: iuc
   revisions:
   - 374e9062d874
+  - 48b42ee61bc5
   - 51c6ccaace7e
   - 53460afd5115
   - '566197475670'
@@ -280,6 +281,7 @@ tools:
   owner: iuc
   revisions:
   - 0a10fddd97d2
+  - 26f2fe7e53a1
   - 44c66e8d21e6
   - 6c571966cfb9
   - 7c9417381ad5
@@ -343,5 +345,6 @@ tools:
   - d08080933718
   - dc3fe98e7b37
   - e188a9d25ed2
+  - ed3a21033188
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data