Updated trusted tools (2024-09-10)

ecology.yaml.lock

@@ -1510,6 +1510,7 @@ tools:
   owner: ecology
   revisions:
   - 3b0fa963ae3e
+  - 67b2cd9c2954
   - d4f168043757
   - debfa8a223c0
   tool_panel_section_label: Data and Metadata Management
@@ -1519,22 +1520,26 @@ tools:
   - 32707c9f5261
   - 6de4b4f70b7b
   - 8631291a1527
+  - c223db6625c1
   tool_panel_section_label: Data and Metadata Management
 - name: raster_template
   owner: ecology
   revisions:
   - 06e29cdc08bf
+  - 9eaf84bf856f
   - b34c5a70b706
   tool_panel_section_label: Data and Metadata Management
 - name: vector_template
   owner: ecology
   revisions:
   - 330f15f2ad3f
   - 559744b4c50c
+  - c65dd54f9807
   tool_panel_section_label: Data and Metadata Management
 - name: entities_template
   owner: ecology
   revisions:
+  - 1b11e38718af
   - 5bfceb4ef59b
   - 8de58d879d6e
   tool_panel_section_label: Data and Metadata Management
@@ -1544,11 +1549,13 @@ tools:
   - 0fe3b8bd9d8b
   - 4f5816b57c13
   - a5f887cfcf94
+  - d53b708cb348
   tool_panel_section_label: Data and Metadata Management
 - name: taxo_cov_template
   owner: ecology
   revisions:
   - 0cfc9b6da2ac
+  - 20224597fa2c
   - 2af7401f13e0
   - 9507334a3303
   - a45fa46f8010
@@ -1557,6 +1564,7 @@ tools:
   owner: ecology
   revisions:
   - 34dcb86a9351
+  - 4cf24a95c4ff
   - 59349973537f
   - 642e31c435c9
   - 8a697f446051
@@ -1571,6 +1579,7 @@ tools:
   - 3d14d6a4ef7c
   - 409d9329d2be
   - 5c0290c4225a
+  - 6fc2341a92cb
   - bd8b3e7541d5
   tool_panel_section_label: Data and Metadata Management
 - name: ecoregion_geonearestneighbor

tools_iuc.yaml.lock

@@ -18,6 +18,7 @@ tools:
   owner: iuc
   revisions:
   - 5aaffb8d8161
+  - e909d3bc4687
   tool_panel_section_label: Annotation
 - name: amrfinderplus
   owner: iuc
@@ -1649,6 +1650,7 @@ tools:
   owner: iuc
   revisions:
   - 0b663ca9a961
+  - 18dbde5680c0
   - 3d07b8a6dd8c
   - 7d3cd2087698
   - b9ea85dfaf45
@@ -4039,11 +4041,13 @@ tools:
   revisions:
   - 9ed513717fc4
   - afc795d10918
+  - e30bc6da7a36
   - f801b844f239
   tool_panel_section_label: Metagenomic Analysis
 - name: cami_amber_add
   owner: iuc
   revisions:
+  - 04f8949026bf
   - 2e6ddf48a213
   - 433fb72344cb
   - b07cfe3b877e
@@ -4054,6 +4058,7 @@ tools:
   - 848594e0be6a
   - 8754ed6f0096
   - 8f0e53330d8e
+  - bc40aa3adf28
   tool_panel_section_label: Metagenomic Analysis
 - name: name2taxid
   owner: iuc
@@ -4069,6 +4074,7 @@ tools:
   owner: iuc
   revisions:
   - 1e10251b9615
+  - 8d0b2def5e65
   - d368e312aebd
   tool_panel_section_label: Metagenomic Analysis
 - name: krakentools_kreport2krona
@@ -4544,6 +4550,7 @@ tools:
   - 025b0113ee97
   - 150ebe4d0fd9
   - 254cb00a578f
+  - 25a5fa5f86a5
   - 4212f20315e5
   - 46fc97bb98f9
   - 487da152fb43
@@ -4795,6 +4802,7 @@ tools:
   - b4c750fe0fe3
   - b6ecdfac241f
   - c11805a111ea
+  - db58d5898fea
   tool_panel_section_label: Metagenomic Analysis
 - name: fasta_to_contig2bin
   owner: iuc
@@ -5249,6 +5257,7 @@ tools:
   - 43ccbef89f1d
   - c629e6de3c49
   - ef2cace85809
+  - f4580402a2a2
   - faacef62bb54
   tool_panel_section_label: Metagenomic Analysis
 - name: malt_run
@@ -5343,6 +5352,7 @@ tools:
   - 27258eb73f0c
   - 2e5ae05160e0
   - 327d9f4cc95f
+  - 3cc4a60615c0
   - 3f05bf162005
   - 4fd3b5d8706b
   - 7f5d7b0e9884
@@ -5386,6 +5396,7 @@ tools:
   - b6897977d13e
   - b89b0765695d
   - ec368db926f4
+  - ef65b083bd0c
   - f5df500fcc3c
   - fd69c607b43f
   - ff8f55893e7d
@@ -5589,10 +5600,12 @@ tools:
   - 77c3ef9b0ed7
   - 88ebde55bef8
   - e889010415a1
+  - f8ebd1e802d7
   tool_panel_section_label: Metagenomic Analysis
 - name: virannot_otu
   owner: iuc
   revisions:
+  - 40fb54cc6628
   - 6838c2fd1228
   - 735a21808348
   - c9dac9b2e01c
@@ -5602,6 +5615,7 @@ tools:
   revisions:
   - 84d20d9c292d
   - bbaa89f070f4
+  - d1fd5579469d
   - fd7104249a3c
   tool_panel_section_label: Metagenomic Analysis
 - name: vsearch
@@ -7291,6 +7305,7 @@ tools:
 - name: clair3
   owner: iuc
   revisions:
+  - 3843a30053ee
   - 44f6ec903688
   - 63e02ef6e153
   - c8ba8286e7c0
@@ -9389,6 +9404,7 @@ tools:
 - name: samtools_ampliconclip
   owner: iuc
   revisions:
+  - 4967154b9859
   - 5f3ea90dc6ae
   - 6a8febad1f6c
   - a941babb9268
@@ -9407,6 +9423,7 @@ tools:
   revisions:
   - 06dc50b7b711
   - 1ebb4ecdc1ef
+  - 26b4f9f98aca
   - 33208952b99d
   - 3d873744df7e
   - 92ec40abcdcf
@@ -9437,13 +9454,15 @@ tools:
   - 720217c23995
   - a8d69aee190e
   - b3d99709fe1a
+  - b906586a6596
   tool_panel_section_label: SAM/BAM
 - name: samtools_fixmate
   owner: iuc
   revisions:
   - 41e36c99a008
   - 595ae1ba934a
   - bc0cc7bfbfe9
+  - d2df79922531
   - e5ece8fa99de
   tool_panel_section_label: SAM/BAM
 - name: samtools_flagstat
@@ -9471,6 +9490,7 @@ tools:
 - name: samtools_markdup
   owner: iuc
   revisions:
+  - 40fa6c240105
   - 83b8e36e9cbe
   - 887e02a45734
   - 8c440c3002bc
@@ -9488,6 +9508,7 @@ tools:
   - 740ce0a18f0d
   - 8890e2d4c068
   - b40e2d865d52
+  - cae2794d2deb
   tool_panel_section_label: SAM/BAM
 - name: samtools_mpileup
   owner: devteam
@@ -9514,6 +9535,7 @@ tools:
   revisions:
   - 020e144b5f78
   - 30388d878f81
+  - 85e38b31e8b3
   - bb8cfc6f6e0c
   - d7b4851d1971
   - db000c6007a0
@@ -9532,6 +9554,7 @@ tools:
   - 68ba55e96489
   - a4a10c7924d1
   - b5c88b7b153e
+  - b8beef827165
   tool_panel_section_label: SAM/BAM
 - name: samtools_sort
   owner: devteam
@@ -9540,6 +9563,7 @@ tools:
   - a430da4f04cd
   - a577ea614bed
   - cab3f8d35989
+  - d54a4df48867
   - e613c1ad4c4c
   - f56bdb93ae58
   tool_panel_section_label: SAM/BAM
@@ -9549,6 +9573,7 @@ tools:
   - 135c85f4cfaf
   - 57f3e32f809d
   - 5d9ae78f34d3
+  - 818030fa6bbf
   - b7f7826ef1cd
   - bcedabb53ddf
   - bd850490c7f1
@@ -9561,6 +9586,7 @@ tools:
   - 24c5d43cb545
   - 3a0efe14891f
   - 47035d167365
+  - 541082d03bef
   - 5a08c09b9311
   - 793ad847121d
   - 8cfc17e27132
@@ -9573,6 +9599,7 @@ tools:
   revisions:
   - 0dbf49c414ae
   - 2dce91e11ca7
+  - 32dc5f781059
   - 5826298f6a73
   - 6be888be75f9
   - b01db2684fa5
@@ -11961,6 +11988,7 @@ tools:
   owner: iuc
   revisions:
   - 0cb27ea69dc1
+  - 2c61c30a57e7
   - 4ba60cb14cb0
   - 5fe20c915fa6
   - 9c43baa60906
@@ -12001,6 +12029,7 @@ tools:
   revisions:
   - 10232d2b5062
   - 2814c058a087
+  - df84aaed4769
   - e7b39a7e0024
 - name: deeptools_alignmentsieve
   owner: bgruening