454-and-IonTorrent

GeneLab bioinformatics processing pipeline for 454 and IonTorrent amplicon sequencing data

The document GL-DPPD-7106.md holds an overview and example commands for how GeneLab processes 454 and IonTorrent amplicon sequencing datasets. See the Repository Links descriptions below for more information. Processed data output files and processing code is provided for each GLDS dataset in the Open Science Data Repository (OSDR).

Note: The exact processing commands and Amp454IonTor version used for specific GLDS datasets can be found in the *_processing_info.zip file under "Files" for each respective GLDS dataset in the Open Science Data Repository (OSDR).

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Repository Links

• Pipeline_GL-DPPD-7106_Versions

  • Contains the current and previous GeneLab 454 and IonTorrent amplicon sequencing data processing pipeline (Amp454IonTor) versions documentation

• Workflow_Documentation

  • Contains instructions for installing and running the GeneLab Amp454IonTor workflow

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Developed and maintained by:
Michael D. Lee ([email protected])