Fix up conflicts and isort again

tests/test_datafiles.py

@@ -1,8 +1,10 @@
 """Test installation of PINT data files"""
 import os
+import tempfile
+
 import pytest
+
 import pint.config
-import tempfile
 
 
 @pytest.fixture

tests/test_density.py

@@ -8,8 +8,8 @@
 from astropy.time import Time
 from pylab import *
 
-import pint.toa as toa
 import pint.simulation as simulation
+import pint.toa as toa
 from pint.models import get_model
 
 

tests/test_derived_quantities.py

@@ -28,17 +28,17 @@
 from pint.derived_quantities import (
     a1sini,
     companion_mass,
+    gamma,
     mass_funct,
     mass_funct2,
+    omdot,
+    omdot_to_mtot,
+    pbdot,
     pulsar_age,
     pulsar_B,
     pulsar_B_lightcyl,
     pulsar_edot,
     pulsar_mass,
-    omdot,
-    pbdot,
-    gamma,
-    omdot_to_mtot,
 )
 
 

tests/test_downhill_fitter.py

@@ -13,8 +13,8 @@
 import pint.fitter
 from pint.models import get_model
 from pint.models.timing_model import MissingTOAs
-from pint.toa import merge_TOAs
 from pint.simulation import make_fake_toas_uniform
+from pint.toa import merge_TOAs
 
 par_eccentric = """
 PSR J1234+5678

tests/test_fake_toas.py

@@ -1,15 +1,17 @@
-import astropy.units as u
-import pint.simulation
-from pint.models.model_builder import get_model, get_model_and_toas
-from pint.toa import get_TOAs
-import pint.residuals
 import io
-import numpy as np
-import tempfile
 import os
+import tempfile
+
+import astropy.units as u
+import numpy as np
+from pinttestdata import datadir, testdir
+
 import pint.config
+import pint.residuals
+import pint.simulation
 from pint.fitter import GLSFitter
-from pinttestdata import datadir, testdir
+from pint.models.model_builder import get_model, get_model_and_toas
+from pint.toa import get_TOAs
 
 
 def test_noise_addition():

tests/test_fitter.py

@@ -11,10 +11,8 @@
 from pinttestdata import datadir
 
 import pint.models as tm
-from pint import fitter, toa, simulation
-from pinttestdata import datadir
 import pint.models.parameter as param
-from pint import ls
+from pint import fitter, ls, simulation, toa
 from pint.models import get_model, get_model_and_toas
 
 

tests/test_fitter_compare.py

@@ -19,8 +19,8 @@
     WLSFitter,
 )
 from pint.models.model_builder import get_model
-from pint.toa import get_TOAs
 from pint.simulation import make_fake_toas_uniform
+from pint.toa import get_TOAs
 
 
 @pytest.fixture

tests/test_flagging_clustering.py

@@ -1,19 +1,18 @@
 """Tests for clustering and flagging"""
+import copy
 import logging
 import os
 import unittest
-import pytest
-import copy
 
 import astropy.units as u
 import numpy as np
+import pytest
+from pinttestdata import datadir
 
 import pint.models.model_builder as mb
 import pint.toa as toa
+from pint.models import PhaseJump, parameter as p
 from pint.residuals import Residuals
-from pinttestdata import datadir
-from pint.models import parameter as p
-from pint.models import PhaseJump
 
 
 class SimpleSetup:

tests/test_infostrings.py

@@ -1,20 +1,20 @@
 """Tests for adding info strings to parfiles and tim files"""
-import logging
-import os
-import unittest
-import pytest
 import copy
 import io
+import logging
+import os
 import platform
+import unittest
 
 import astropy.units as u
 import numpy as np
+import pytest
+from pinttestdata import datadir
 
+import pint
 import pint.models.model_builder as mb
 import pint.toa as toa
 from pint.residuals import Residuals
-from pinttestdata import datadir
-import pint
 
 
 class SimpleSetup:

tests/test_jump.py

@@ -15,6 +15,7 @@
 import pint.toa
 from pint.models import PhaseJump, get_model, parameter as p
 from pint.residuals import Residuals
+from pint.simulation import make_fake_toas_uniform
 
 
 class SimpleSetup:
@@ -248,7 +249,7 @@ def test_multiple_jumps_add():
                 first_jump = jmp
             else:
                 second_jump = jmp
-    toas = pint.toa.make_fake_toas(57000, 60000 - 1, 10, m)
+    toas = make_fake_toas_uniform(57000, 60000 - 1, 10, m)
 
     first_jump.quantity = 100 * u.us
     second_jump.quantity = 0 * u.us
@@ -323,7 +324,7 @@ def small():
     """
         )
     )
-    t = pint.toa.make_fake_toas(58000, 60000, 20, m)
+    t = make_fake_toas_uniform(58000, 60000, 20, m)
 
     class R:
         pass

tests/test_model_derivatives.py

@@ -8,13 +8,13 @@
 import numdifftools
 import numpy as np
 import pytest
+from astropy import units as u
 from hypothesis import HealthCheck, Verbosity, assume, given, settings
 from hypothesis.strategies import composite, floats, integers, sampled_from
 from numpy.testing import assert_allclose
-from astropy import units as u
 
-import pint.toa
 import pint.simulation
+import pint.toa
 from pint.models import get_model
 
 

tests/test_parametercovariancematrix.py

@@ -17,8 +17,8 @@
     WLSFitter,
 )
 from pint.models.model_builder import get_model
-from pint.toa import get_TOAs
 from pint.simulation import make_fake_toas_uniform
+from pint.toa import get_TOAs
 
 
 @pytest.fixture

tests/test_plk_widget.py

@@ -1,7 +1,9 @@
+from tkinter import Frame
+
 import astropy.units as u
 import pytest
+
 from pint.pintk.plk import PlkWidget
-from tkinter import Frame
 
 
 @pytest.fixture

tests/test_pulse_number.py

@@ -11,9 +11,9 @@
 
 import pint.fitter
 from pint.models import get_model
-from pint.toa import get_TOAs
-from pint.simulation import make_fake_toas_uniform
 from pint.residuals import Residuals
+from pint.simulation import make_fake_toas_uniform
+from pint.toa import get_TOAs
 
 parfile = os.path.join(datadir, "withpn.par")
 timfile = os.path.join(datadir, "withpn.tim")

tests/test_random_models.py

@@ -7,15 +7,11 @@
 # matplotlib.use('TKAgg')
 import matplotlib.pyplot as plt
 import numpy as np
-import astropy.units as u
-
-from pint.models import get_model, get_model_and_toas
-from pint import fitter, toa, simulation
 import pytest
 from pinttestdata import datadir
 
 import pint.models.parameter as param
-from pint import fitter, ls, toa, utils
+from pint import fitter, ls, simulation, toa, utils
 from pint.models import get_model, get_model_and_toas
 
 

tests/test_residuals.py

@@ -16,8 +16,8 @@
 from pint.models import get_model
 from pint.models.dispersion_model import Dispersion
 from pint.residuals import CombinedResiduals, Residuals, WidebandTOAResiduals
-from pint.toa import get_TOAs
 from pint.simulation import make_fake_toas_uniform
+from pint.toa import get_TOAs
 from pint.utils import weighted_mean
 
 os.chdir(datadir)

tests/test_solar_wind.py

@@ -14,9 +14,9 @@
 from pinttestdata import datadir
 
 from pint.fitter import WidebandTOAFitter
-from pint.toa import get_TOAs
+from pint.models import get_model
 from pint.simulation import make_fake_toas_uniform
-from pinttestdata import datadir
+from pint.toa import get_TOAs
 
 os.chdir(datadir)
 

tests/test_stigma.py

@@ -6,14 +6,12 @@
 import astropy.units as u
 import numpy as np
 import pytest
-import tempfile
-
-from pint.models import get_model
-import pint.toa as toa
-import pint.simulation as simulation
 import test_derivative_utils as tdu
 from pinttestdata import datadir
 
+import pint.simulation as simulation
+import pint.toa as toa
+from pint.models import get_model
 from pint.residuals import Residuals
 
 stigma_template = """

tests/test_timing_model.py

@@ -6,22 +6,22 @@
 import astropy.units as u
 import numpy as np
 import pytest
-from pinttestdata import datadir
-from pint.simulation import make_fake_toas_uniform
-from pint.toa import get_TOAs
 from astropy.time import Time
+from pinttestdata import datadir
 
 from pint.models import (
     DEFAULT_ORDER,
     AstrometryEquatorial,
     BinaryELL1,
+    PhaseJump,
     Spindown,
     TimingModel,
-    PhaseJump,
     Wave,
     get_model,
     parameter as p,
 )
+from pint.simulation import make_fake_toas_uniform
+from pint.toa import get_TOAs
 
 
 @pytest.fixture

tests/test_toa.py

@@ -9,8 +9,8 @@
 
 from pint.models import get_model
 from pint.observatory import get_observatory
-from pint.toa import TOA, TOAs
 from pint.simulation import make_fake_toas_uniform
+from pint.toa import TOA, TOAs
 
 
 class TestTOA(unittest.TestCase):

tests/test_toa_pickle.py

@@ -13,8 +13,7 @@
 
 import pint.models
 import pint.toa
-from pint import toa
-from pint import simulation
+from pint import simulation, toa
 
 
 @pytest.fixture

tests/test_toa_reader.py

@@ -11,13 +11,10 @@
 from astropy.utils.iers import conf
 from hypothesis import given
 from hypothesis.extra.numpy import arrays
-from pint import toa, simulation
-from pint.observatory import bipm_default
-from pint.models import get_model, get_model_and_toas
 from hypothesis.strategies import floats, integers, sampled_from
 from pinttestdata import datadir
 
-from pint import toa
+from pint import simulation, toa
 from pint.models import get_model, get_model_and_toas
 from pint.observatory import bipm_default
 

tests/test_toa_writer.py

@@ -8,12 +8,8 @@
 from astropy.time import Time
 from pinttestdata import datadir
 
+from pint import simulation, toa
 from pint.models import get_model
-from pint import toa, simulation
-from pinttestdata import datadir
-from astropy.time import Time
-import numpy as np
-import astropy.units as u
 
 
 def test_roundtrip_bary_toa_Tempo2format(tmpdir):