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v0.2.0

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@myles-lewis myles-lewis released this 08 Jan 22:21
· 172 commits to main since this release

New features

  • Improved ggplot2 gene track plotting via gg_genetracks() to enable easy
    layering of several ggplot2 plots above a row of gene tracks (thanks to nickhir
    for the suggestion).
  • For those that only want the gene tracks for their own plots, this is now
    easier by simply not specifying data (or setting it to NULL) when calling
    locus().
  • Added function quick_peak() for quickly finding peaks in GWAS datasets.
  • Added function link_recomb() for retrieving recombination data from UCSC.
  • Recombination rate is shown on a secondary y axis by locus_plot() and
    locus_ggplot().
  • Added ... to link_LD() and link_eqtl() to allow passing of additional
    arguments such as genome_build to LDlinkR queries.

Changes

  • Argument LDtoken in link_LD() and link_eqtl() has been renamed token
    to be consistent with LDlinkR.

Bugfixes

  • Fixed bug when plotting LD with absent levels in locus_ggplot() and
    locus_plotly().
  • Fixed plots with no gene tracks (thanks to Tom Willis).
  • Genes with missing gene symbols now display the ensembl gene ID.