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Improved ggplot2 gene track plotting via gg_genetracks() to enable easy
layering of several ggplot2 plots above a row of gene tracks (thanks to nickhir
for the suggestion).
For those that only want the gene tracks for their own plots, this is now
easier by simply not specifying data (or setting it to NULL) when calling locus().
Added function quick_peak() for quickly finding peaks in GWAS datasets.
Added function link_recomb() for retrieving recombination data from UCSC.
Recombination rate is shown on a secondary y axis by locus_plot() and locus_ggplot().
Added ... to link_LD() and link_eqtl() to allow passing of additional
arguments such as genome_build to LDlinkR queries.
Changes
Argument LDtoken in link_LD() and link_eqtl() has been renamed token
to be consistent with LDlinkR.
Bugfixes
Fixed bug when plotting LD with absent levels in locus_ggplot() and locus_plotly().
Fixed plots with no gene tracks (thanks to Tom Willis).
Genes with missing gene symbols now display the ensembl gene ID.