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Add a link to the source code #45

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Add a link to the source code #45

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25 changes: 13 additions & 12 deletions app.py
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Original file line number Diff line number Diff line change
Expand Up @@ -45,6 +45,7 @@
dbc.NavItem(dbc.NavLink("Report Feedback", href="https://docs.google.com/forms/d/e/1FAIpQLSf1-sw-P0SQGokyeaOpEmLda0UPJW93qkrI8rfp7D46fHVi6g/viewform?usp=sf_link")),
dbc.NavItem(dbc.NavLink("Preprint Publication", href="https://chemrxiv.org/articles/preprint/NPClassifier_A_Deep_Neural_Network-Based_Structural_Classification_Tool_for_Natural_Products/12885494/1")),
dbc.NavItem(dbc.NavLink("API", href="https://ccms-ucsd.github.io/GNPSDocumentation/api/#structure-np-classifier")),
dbc.NavItem(dbc.NavLink("Source code", href="https://github.com/mwang87/NP-Classifier"))
],
navbar=True)
],
Expand Down Expand Up @@ -101,7 +102,7 @@ def display_page(pathname):
else:
return "CC1C(O)CC2C1C(OC1OC(COC(C)=O)C(O)C(O)C1O)OC=C2C(O)=O"

# This function will rerun at any
# This function will rerun at any
@app.callback(
[Output('classification_table', 'children'), Output('structure', 'children')],
[Input('smiles_string', 'value')],
Expand Down Expand Up @@ -162,7 +163,7 @@ def handle_smiles(smiles_string):

return [table_fig, img_obj]

# This function will rerun at any
# This function will rerun at any
@app.callback(
[Output('usage_summary', 'children')],
[Input('url', 'pathname')],
Expand Down Expand Up @@ -237,16 +238,16 @@ def classify_structure(smiles):
pathway_result = []

# Voting on Answer
pathway_result, superclass_result, class_result, isglycoside = prediction_voting.vote_classification(n_path,
n_class,
n_super,
pathway_result, superclass_result, class_result, isglycoside = prediction_voting.vote_classification(n_path,
n_class,
n_super,
pred_class,
pred_super,
path_from_class,
path_from_superclass,
isglycoside,
pred_super,
path_from_class,
path_from_superclass,
isglycoside,
ontology_dictionary)

return isglycoside, class_result, superclass_result, pathway_result, path_from_class, path_from_superclass, n_path, fp1, fp2


Expand All @@ -264,7 +265,7 @@ def _process_full_classification(smiles_string):
respond_dict["superclass_results"] = superclass_results
respond_dict["pathway_results"] = pathway_results
respond_dict["isglycoside"] = isglycoside

respond_dict["fp1"] = fp1
respond_dict["fp2"] = fp2

Expand All @@ -277,7 +278,7 @@ def _process_full_classification(smiles_string):
)
except:
pass

return respond_dict


Expand Down