parse_webapp

A multiple protein sequence capable visualization and analysis web app built on the Cmd2Web framework.

Setup (In Progress)

Clone Repo

cd parse_webapp/

Install vritualenv

pip install virtualenv

Find python path (i.e /usr/local/bin/python3.6) and start virtualenv

virtualenv -p /usr/local/bin/python3.6 cmd2web_env
source cmd2web_env/bin/activate

Run configure script

bash parse_src/configure.sh 

Change command path in `cmd2web/ex_configs/parse_config.json

        "name" : "parse",
        ...
        "command":
        [
            "gfortran -o /home/user/parse_webapp/cmd2web/src/web_src/static/js/Parse.exe /home/user/parse_webapp/cmd2web/src/web_src/static/js/Parse.f",
            "&& /home/user/parse_webapp/cmd2web/src/web_src/static/js/./Parse.exe ",
            "$sequence"
        ],

Start Server (need to change a few paths in parse_config.json)

python cmd2web/src/server.py --config cmd2web/ex_configs/parse_config.json 

Navigate to http://127.0.0.1:8080/parse Enter query sequence into search bar (note: hit enter to submit, button is broken right now)