Skip to content

Commit

Permalink
Update documentation
Browse files Browse the repository at this point in the history
  • Loading branch information
@mpavsic
mpavsic committed Oct 19, 2024
1 parent e8bd488 commit a154b03
Show file tree
Hide file tree
Showing 207 changed files with 9,708 additions and 9,237 deletions.
2 changes: 1 addition & 1 deletion .buildinfo
View file
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 056c30a74b33080c9b2c087e9ce84eb9
config: 0d7f0a557e552ca5e48eaf0fd5d4f669
tags: 645f666f9bcd5a90fca523b33c5a78b7
4 changes: 3 additions & 1 deletion _sources/vaje/modeliranje.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -69,4 +69,6 @@ Vsak si naj izbere en protein dolžine največ 300 aminokislinskih ostankov (pri
Odgovorite na vprašanji:
1. Ali model iz SWISS-MODEL pokriva celotno ak zaporedje, ki ste ga uporabili? Zakaj da oz. ne?
2. Kako je z zanesljivostjo modela vzdolž aminokislinskega zaporedja (tako za SWISS-MODEL kot AlphaFold2)? Je to kakorkoli povezano s pričakovano strukturo (ali strukturno neurejenostjo) določenih regij zaporedja (npr. zanke)?
3. Ocenite biološko smiselnost modela glede na značilnosti zaporedja, anotirane v Uniprot, oz. glede na značilnosti dobro anotiranega homolognega proteina podobne dolžine.
3. Ocenite biološko smiselnost modela glede na značilnosti zaporedja, anotirane v Uniprot, oz. glede na značilnosti dobro anotiranega homolognega proteina podobne dolžine.

<iframe src="https://molstar.org/viewer/?snapshot-url=https://raw.githubusercontent.com/mpavsic/sbio/main/sbio/seje/na-ecori.molx&snapshot-url-type=molx&hide-controls=1" style="width: 500px; height: 130px; border: 0px"></iframe>
2 changes: 1 addition & 1 deletion ....1e8bd061cd6da7fc9cf755528e8ffc24.min.css → _sphinx_design_static/sphinx-design.min.css
View file

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion _static/basic.css
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Sphinx stylesheet -- basic theme.
*
* :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
Expand Down
2 changes: 1 addition & 1 deletion _static/doctools.js
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Base JavaScript utilities for all Sphinx HTML documentation.
*
* :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
Expand Down
4 changes: 2 additions & 2 deletions _static/language_data.js
View file
Original file line number Diff line number Diff line change
Expand Up @@ -5,15 +5,15 @@
* This script contains the language-specific data used by searchtools.js,
* namely the list of stopwords, stemmer, scorer and splitter.
*
* :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/

var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];


/* Non-minified version is copied as a separate JS file, is available */
/* Non-minified version is copied as a separate JS file, if available */

/**
* Porter Stemmer
Expand Down
138 changes: 69 additions & 69 deletions _static/pygments.css
View file
Original file line number Diff line number Diff line change
Expand Up @@ -3,77 +3,77 @@ html[data-theme="light"] .highlight td.linenos .normal { color: inherit; backgro
html[data-theme="light"] .highlight span.linenos { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
html[data-theme="light"] .highlight td.linenos .special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
html[data-theme="light"] .highlight span.linenos.special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
html[data-theme="light"] .highlight .hll { background-color: #7971292e }
html[data-theme="light"] .highlight { background: #fefefe; color: #545454 }
html[data-theme="light"] .highlight .c { color: #797129 } /* Comment */
html[data-theme="light"] .highlight .err { color: #d91e18 } /* Error */
html[data-theme="light"] .highlight .k { color: #7928a1 } /* Keyword */
html[data-theme="light"] .highlight .l { color: #797129 } /* Literal */
html[data-theme="light"] .highlight .n { color: #545454 } /* Name */
html[data-theme="light"] .highlight .o { color: #008000 } /* Operator */
html[data-theme="light"] .highlight .p { color: #545454 } /* Punctuation */
html[data-theme="light"] .highlight .ch { color: #797129 } /* Comment.Hashbang */
html[data-theme="light"] .highlight .cm { color: #797129 } /* Comment.Multiline */
html[data-theme="light"] .highlight .cp { color: #797129 } /* Comment.Preproc */
html[data-theme="light"] .highlight .cpf { color: #797129 } /* Comment.PreprocFile */
html[data-theme="light"] .highlight .c1 { color: #797129 } /* Comment.Single */
html[data-theme="light"] .highlight .cs { color: #797129 } /* Comment.Special */
html[data-theme="light"] .highlight .gd { color: #007faa } /* Generic.Deleted */
html[data-theme="light"] .highlight .hll { background-color: #fae4c2 }
html[data-theme="light"] .highlight { background: #fefefe; color: #080808 }
html[data-theme="light"] .highlight .c { color: #515151 } /* Comment */
html[data-theme="light"] .highlight .err { color: #a12236 } /* Error */
html[data-theme="light"] .highlight .k { color: #6730c5 } /* Keyword */
html[data-theme="light"] .highlight .l { color: #7f4707 } /* Literal */
html[data-theme="light"] .highlight .n { color: #080808 } /* Name */
html[data-theme="light"] .highlight .o { color: #00622f } /* Operator */
html[data-theme="light"] .highlight .p { color: #080808 } /* Punctuation */
html[data-theme="light"] .highlight .ch { color: #515151 } /* Comment.Hashbang */
html[data-theme="light"] .highlight .cm { color: #515151 } /* Comment.Multiline */
html[data-theme="light"] .highlight .cp { color: #515151 } /* Comment.Preproc */
html[data-theme="light"] .highlight .cpf { color: #515151 } /* Comment.PreprocFile */
html[data-theme="light"] .highlight .c1 { color: #515151 } /* Comment.Single */
html[data-theme="light"] .highlight .cs { color: #515151 } /* Comment.Special */
html[data-theme="light"] .highlight .gd { color: #005b82 } /* Generic.Deleted */
html[data-theme="light"] .highlight .ge { font-style: italic } /* Generic.Emph */
html[data-theme="light"] .highlight .gh { color: #007faa } /* Generic.Heading */
html[data-theme="light"] .highlight .gh { color: #005b82 } /* Generic.Heading */
html[data-theme="light"] .highlight .gs { font-weight: bold } /* Generic.Strong */
html[data-theme="light"] .highlight .gu { color: #007faa } /* Generic.Subheading */
html[data-theme="light"] .highlight .kc { color: #7928a1 } /* Keyword.Constant */
html[data-theme="light"] .highlight .kd { color: #7928a1 } /* Keyword.Declaration */
html[data-theme="light"] .highlight .kn { color: #7928a1 } /* Keyword.Namespace */
html[data-theme="light"] .highlight .kp { color: #7928a1 } /* Keyword.Pseudo */
html[data-theme="light"] .highlight .kr { color: #7928a1 } /* Keyword.Reserved */
html[data-theme="light"] .highlight .kt { color: #797129 } /* Keyword.Type */
html[data-theme="light"] .highlight .ld { color: #797129 } /* Literal.Date */
html[data-theme="light"] .highlight .m { color: #797129 } /* Literal.Number */
html[data-theme="light"] .highlight .s { color: #008000 } /* Literal.String */
html[data-theme="light"] .highlight .na { color: #797129 } /* Name.Attribute */
html[data-theme="light"] .highlight .nb { color: #797129 } /* Name.Builtin */
html[data-theme="light"] .highlight .nc { color: #007faa } /* Name.Class */
html[data-theme="light"] .highlight .no { color: #007faa } /* Name.Constant */
html[data-theme="light"] .highlight .nd { color: #797129 } /* Name.Decorator */
html[data-theme="light"] .highlight .ni { color: #008000 } /* Name.Entity */
html[data-theme="light"] .highlight .ne { color: #7928a1 } /* Name.Exception */
html[data-theme="light"] .highlight .nf { color: #007faa } /* Name.Function */
html[data-theme="light"] .highlight .nl { color: #797129 } /* Name.Label */
html[data-theme="light"] .highlight .nn { color: #545454 } /* Name.Namespace */
html[data-theme="light"] .highlight .nx { color: #545454 } /* Name.Other */
html[data-theme="light"] .highlight .py { color: #007faa } /* Name.Property */
html[data-theme="light"] .highlight .nt { color: #007faa } /* Name.Tag */
html[data-theme="light"] .highlight .nv { color: #d91e18 } /* Name.Variable */
html[data-theme="light"] .highlight .ow { color: #7928a1 } /* Operator.Word */
html[data-theme="light"] .highlight .pm { color: #545454 } /* Punctuation.Marker */
html[data-theme="light"] .highlight .w { color: #545454 } /* Text.Whitespace */
html[data-theme="light"] .highlight .mb { color: #797129 } /* Literal.Number.Bin */
html[data-theme="light"] .highlight .mf { color: #797129 } /* Literal.Number.Float */
html[data-theme="light"] .highlight .mh { color: #797129 } /* Literal.Number.Hex */
html[data-theme="light"] .highlight .mi { color: #797129 } /* Literal.Number.Integer */
html[data-theme="light"] .highlight .mo { color: #797129 } /* Literal.Number.Oct */
html[data-theme="light"] .highlight .sa { color: #008000 } /* Literal.String.Affix */
html[data-theme="light"] .highlight .sb { color: #008000 } /* Literal.String.Backtick */
html[data-theme="light"] .highlight .sc { color: #008000 } /* Literal.String.Char */
html[data-theme="light"] .highlight .dl { color: #008000 } /* Literal.String.Delimiter */
html[data-theme="light"] .highlight .sd { color: #008000 } /* Literal.String.Doc */
html[data-theme="light"] .highlight .s2 { color: #008000 } /* Literal.String.Double */
html[data-theme="light"] .highlight .se { color: #008000 } /* Literal.String.Escape */
html[data-theme="light"] .highlight .sh { color: #008000 } /* Literal.String.Heredoc */
html[data-theme="light"] .highlight .si { color: #008000 } /* Literal.String.Interpol */
html[data-theme="light"] .highlight .sx { color: #008000 } /* Literal.String.Other */
html[data-theme="light"] .highlight .sr { color: #d91e18 } /* Literal.String.Regex */
html[data-theme="light"] .highlight .s1 { color: #008000 } /* Literal.String.Single */
html[data-theme="light"] .highlight .ss { color: #007faa } /* Literal.String.Symbol */
html[data-theme="light"] .highlight .bp { color: #797129 } /* Name.Builtin.Pseudo */
html[data-theme="light"] .highlight .fm { color: #007faa } /* Name.Function.Magic */
html[data-theme="light"] .highlight .vc { color: #d91e18 } /* Name.Variable.Class */
html[data-theme="light"] .highlight .vg { color: #d91e18 } /* Name.Variable.Global */
html[data-theme="light"] .highlight .vi { color: #d91e18 } /* Name.Variable.Instance */
html[data-theme="light"] .highlight .vm { color: #797129 } /* Name.Variable.Magic */
html[data-theme="light"] .highlight .il { color: #797129 } /* Literal.Number.Integer.Long */
html[data-theme="light"] .highlight .gu { color: #005b82 } /* Generic.Subheading */
html[data-theme="light"] .highlight .kc { color: #6730c5 } /* Keyword.Constant */
html[data-theme="light"] .highlight .kd { color: #6730c5 } /* Keyword.Declaration */
html[data-theme="light"] .highlight .kn { color: #6730c5 } /* Keyword.Namespace */
html[data-theme="light"] .highlight .kp { color: #6730c5 } /* Keyword.Pseudo */
html[data-theme="light"] .highlight .kr { color: #6730c5 } /* Keyword.Reserved */
html[data-theme="light"] .highlight .kt { color: #7f4707 } /* Keyword.Type */
html[data-theme="light"] .highlight .ld { color: #7f4707 } /* Literal.Date */
html[data-theme="light"] .highlight .m { color: #7f4707 } /* Literal.Number */
html[data-theme="light"] .highlight .s { color: #00622f } /* Literal.String */
html[data-theme="light"] .highlight .na { color: #912583 } /* Name.Attribute */
html[data-theme="light"] .highlight .nb { color: #7f4707 } /* Name.Builtin */
html[data-theme="light"] .highlight .nc { color: #005b82 } /* Name.Class */
html[data-theme="light"] .highlight .no { color: #005b82 } /* Name.Constant */
html[data-theme="light"] .highlight .nd { color: #7f4707 } /* Name.Decorator */
html[data-theme="light"] .highlight .ni { color: #00622f } /* Name.Entity */
html[data-theme="light"] .highlight .ne { color: #6730c5 } /* Name.Exception */
html[data-theme="light"] .highlight .nf { color: #005b82 } /* Name.Function */
html[data-theme="light"] .highlight .nl { color: #7f4707 } /* Name.Label */
html[data-theme="light"] .highlight .nn { color: #080808 } /* Name.Namespace */
html[data-theme="light"] .highlight .nx { color: #080808 } /* Name.Other */
html[data-theme="light"] .highlight .py { color: #005b82 } /* Name.Property */
html[data-theme="light"] .highlight .nt { color: #005b82 } /* Name.Tag */
html[data-theme="light"] .highlight .nv { color: #a12236 } /* Name.Variable */
html[data-theme="light"] .highlight .ow { color: #6730c5 } /* Operator.Word */
html[data-theme="light"] .highlight .pm { color: #080808 } /* Punctuation.Marker */
html[data-theme="light"] .highlight .w { color: #080808 } /* Text.Whitespace */
html[data-theme="light"] .highlight .mb { color: #7f4707 } /* Literal.Number.Bin */
html[data-theme="light"] .highlight .mf { color: #7f4707 } /* Literal.Number.Float */
html[data-theme="light"] .highlight .mh { color: #7f4707 } /* Literal.Number.Hex */
html[data-theme="light"] .highlight .mi { color: #7f4707 } /* Literal.Number.Integer */
html[data-theme="light"] .highlight .mo { color: #7f4707 } /* Literal.Number.Oct */
html[data-theme="light"] .highlight .sa { color: #00622f } /* Literal.String.Affix */
html[data-theme="light"] .highlight .sb { color: #00622f } /* Literal.String.Backtick */
html[data-theme="light"] .highlight .sc { color: #00622f } /* Literal.String.Char */
html[data-theme="light"] .highlight .dl { color: #00622f } /* Literal.String.Delimiter */
html[data-theme="light"] .highlight .sd { color: #00622f } /* Literal.String.Doc */
html[data-theme="light"] .highlight .s2 { color: #00622f } /* Literal.String.Double */
html[data-theme="light"] .highlight .se { color: #00622f } /* Literal.String.Escape */
html[data-theme="light"] .highlight .sh { color: #00622f } /* Literal.String.Heredoc */
html[data-theme="light"] .highlight .si { color: #00622f } /* Literal.String.Interpol */
html[data-theme="light"] .highlight .sx { color: #00622f } /* Literal.String.Other */
html[data-theme="light"] .highlight .sr { color: #a12236 } /* Literal.String.Regex */
html[data-theme="light"] .highlight .s1 { color: #00622f } /* Literal.String.Single */
html[data-theme="light"] .highlight .ss { color: #005b82 } /* Literal.String.Symbol */
html[data-theme="light"] .highlight .bp { color: #7f4707 } /* Name.Builtin.Pseudo */
html[data-theme="light"] .highlight .fm { color: #005b82 } /* Name.Function.Magic */
html[data-theme="light"] .highlight .vc { color: #a12236 } /* Name.Variable.Class */
html[data-theme="light"] .highlight .vg { color: #a12236 } /* Name.Variable.Global */
html[data-theme="light"] .highlight .vi { color: #a12236 } /* Name.Variable.Instance */
html[data-theme="light"] .highlight .vm { color: #7f4707 } /* Name.Variable.Magic */
html[data-theme="light"] .highlight .il { color: #7f4707 } /* Literal.Number.Integer.Long */
html[data-theme="dark"] .highlight pre { line-height: 125%; }
html[data-theme="dark"] .highlight td.linenos .normal { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
html[data-theme="dark"] .highlight span.linenos { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
Expand Down
2 changes: 1 addition & 1 deletion _static/scripts/bootstrap.js
View file

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions _static/scripts/bootstrap.js.LICENSE.txt
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
/*!
* Bootstrap v5.3.2 (https://getbootstrap.com/)
* Copyright 2011-2023 The Bootstrap Authors (https://github.com/twbs/bootstrap/graphs/contributors)
* Bootstrap v5.3.3 (https://getbootstrap.com/)
* Copyright 2011-2024 The Bootstrap Authors (https://github.com/twbs/bootstrap/graphs/contributors)
* Licensed under MIT (https://github.com/twbs/bootstrap/blob/main/LICENSE)
*/
2 changes: 1 addition & 1 deletion _static/scripts/bootstrap.js.map
View file

Large diffs are not rendered by default.

Loading

0 comments on commit a154b03

Please sign in to comment.