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If that character is in the raw output (that is, it's coming directly from the LLM) then ontogpt should catch it (but it doesn't right now AFAIK).
Opened monarch-initiative/ontogpt#454
yaml output by ontogpt contained a \x0004 character, which seems to be an end of transmission in unicode, see
https://en.wikipedia.org/wiki/End-of-Transmission_character
The following fixes it:
https://github.com/monarch-initiative/malco/blob/653291d119a5fffb31b2779b8a52221dadfea50e/src/malco/post_process/post_process_results_format.py#L26
It could have been produced by the following:
https://github.com/monarch-initiative/malco/blob/653291d119a5fffb31b2779b8a52221dadfea50e/src/malco/run/run.py#L48-L51
This issue is not pressing and more of a reminder to me to eventually look into it, but @caufieldjh let me know if you are interseted.
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