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phenio drops xrefs #91

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cmungall opened this issue Nov 16, 2024 · 3 comments · Fixed by #94
Closed

phenio drops xrefs #91

cmungall opened this issue Nov 16, 2024 · 3 comments · Fixed by #94
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@cmungall
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✗ sqlite3 $db/hp.db
SQLite version 3.37.0 2021-12-09 01:34:53
Enter ".help" for usage hints.
sqlite> select * from statements where subject='HP:0030376' and predicate='oio:hasDbXref';
HP:0030376|HP:0030376|oio:hasDbXref||UMLS:C4072915|||
sqlite> ^D
✗ sqlite3 $db/phenio.db
SQLite version 3.37.0 2021-12-09 01:34:53
Enter ".help" for usage hints.
sqlite> select * from statements where subject='HP:0030376' and predicate='oio:hasDbXref';

@cmungall
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need it to show up here https://monarchinitiative.org/HP:0030376

@matentzn matentzn self-assigned this Nov 16, 2024
@matentzn
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This is due to the fact the HPO enters PHENIO via uPheno, which is not very modular; I am changing this and adding all phenotype ontologies as individual components to phenio now

@matentzn
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This will be addressed by #94

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