Merge pull request #587 from BenjaminsM/master

Changed parameters for use on zinc-finger
molgenis · Oct 27, 2016 · 5af3222 · 5af3222
2 parents a79238e + 9030942
commit 5af3222
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/compute5/NIPT/parameters.csv b/compute5/NIPT/parameters.csv
@@ -8,19 +8,18 @@ checkStage,module list
 
 ### Tool versions ####
 rVersion,3.2.1-${toolChain}
-sambambaVersion,v0.5.9-${toolChain}
+sambambaVersion,v0.6.4-${toolChain}
 ngsUtilsVersion,16.05.1 
 ppvForNiptVersion,0.1-${toolChain}
 wkHtmlToPdfVersion,0.11.0_rc1-static-amd64
-tmpDataDir,${workDir}/${tmpName}/
-sambambaTool,sambamba_v0.5.9
+sambambaTool,sambamba_v0.6.4
 
 dataDir,/apps/data/
 intermediateDir,${tmpDataDir}/tmp/${project}/${runid}
 inputDataTmp,/groups/umcg-gd/${tmpName}/inputData/${project}
 projectsDir,${tmpDataDir}/projects/${project}/${runid}
 resultsSampleDir,${projectsDir}/results/${DNA_nr}_${externalSampleID}/
-
+tmpDataDir,${workDir}/${tmpName}/
 utrechtDir,/groups/umcg-umcu/${tmpName}/NIPT/${ProjectUtrecht}/
 inputUtrechtDataRawSample,${inputDataTmp}/${externalSampleID}_dedup.bam
 inputDataRawSample,${inputDataTmp}/${externalSampleID}_dedup.filtered.bam

diff --git a/compute5/NIPT/parameters_zinc-finger.csv b/compute5/NIPT/parameters_zinc-finger.csv
@@ -3,4 +3,4 @@ tmpName,tmp05
 prmName,prm02
 root,/apps/
 workDir,/groups/umcg-gd/
-toolChain,goolf-1.7.20
+toolChain,foss-2015b