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molgenis · Oct 11, 2016 · 4305fcb · 4305fcb
1 parent 5b198fc
commit 4305fcb
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/molgenis-pipelines/compute5/BIOS_phasing/protocols/ConvertBeagleToShapeit.sh b/molgenis-pipelines/compute5/BIOS_phasing/protocols/ConvertBeagleToShapeit.sh
@@ -27,7 +27,8 @@ ${stage} ngs-utils/${ngsutilsVersion}
 ${stage} GLib/${GLibVersion}
 ${stage} zlib/${zlibVersion}
 ${stage} bzip2/${bzip2Version}
-${stage} GCC/4.9.3-binutils-2.25
+# THIS NEEDS TO BE LOADED AFTER NGS-UTILS TO PREVENT GCCXX ERROR
+${stage} GCC/${GCCversion}
 ${checkStage}
 
 #Run conversion script beagle vcf to shapeit format