fix(MixtComp): add const to some iterators #48 #66
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: RMixtComp with Eigen 3.4 | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - staging | |
| paths: | |
| - 'MixtComp/**' | |
| - '!MixtComp/docs/**' | |
| - 'RMixtComp/**' | |
| - 'RMixtCompIO/**' | |
| - 'RMixtCompUtilities/**' | |
| - '.github/workflows/RMixtComp-eigen34.yml' | |
| - '!**/README.md' | |
| pull_request: | |
| branches: | |
| - master | |
| - staging | |
| paths: | |
| - 'MixtComp/**' | |
| - '!MixtComp/docs/**' | |
| - 'RMixtComp/**' | |
| - 'RMixtCompIO/**' | |
| - 'RMixtCompUtilities/**' | |
| - '.github/workflows/RMixtComp-eigen34.yml' | |
| - '!**/README.md' | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| shell: Rscript {0} | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install RMixtCompIO dependencies | |
| working-directory: RMixtCompIO | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| install.packages("RcppEigen", repo="https://RcppCore.github.io/drat") | |
| shell: Rscript {0} | |
| - name: Copy MixtComp files | |
| working-directory: RMixtCompIO | |
| run: | | |
| make clean | |
| make updateLib | |
| - name: Compile Rcpp Attributes for RMixtCompIO | |
| working-directory: RMixtCompIO | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: Rcpp::compileAttributes() | |
| shell: Rscript {0} | |
| - name: Check RMixtCompIO | |
| working-directory: RMixtCompIO | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| working-directory: RMixtCompIO | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: RMixtCompIO/check | |
| - name: Install local RMixtCompIO | |
| working-directory: RMixtCompIO | |
| run: R CMD INSTALL --no-multiarch --with-keep.source . | |
| - name: Install RMixtCompUtilities dependencies | |
| working-directory: RMixtCompUtilities | |
| run: remotes::update_packages(setdiff(remotes::local_package_deps(pkgdir = ".", dependencies = TRUE), "RMixtCompIO")) | |
| shell: Rscript {0} | |
| - name: Check RMixtCompUtilities | |
| working-directory: RMixtCompUtilities | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| working-directory: RMixtCompUtilities | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: RMixtCompUtilities/check | |
| - name: Install local RMixtCompUtilities | |
| working-directory: RMixtCompUtilities | |
| run: R CMD INSTALL --no-multiarch --with-keep.source . | |
| - name: Install RMixtComp dependencies | |
| working-directory: RMixtComp | |
| run: remotes::update_packages(setdiff(remotes::local_package_deps(pkgdir = ".", dependencies = TRUE), c("RMixtCompIO", "RMixtCompUtilities"))) | |
| shell: Rscript {0} | |
| - name: Check RMixtComp | |
| working-directory: RMixtComp | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| working-directory: RMixtComp | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: RMixtComp/check |