code written for St. Jude Children's Research Hospital (dept of Computational Biology)
This code is available on GitHub: https://github.com/mnedmonson/SJCRH/
This repo contains source code for the VEP+ and Medal Ceremony pipelines. Note that this is meant for reference purposes only, it is not an installable product. We recommend using the DNAnexus cloud installations of these pipelines, see https://stjude.github.io/sjcloud-docs/guides/tools/pecan-pie/index.html#standalone-usage for details.
Contents:
- clinical-classifier: Medal Ceremony
- snv-vep: VEP+
- snv: "bambino2vcf" Bambino-to-VCF conversion script
- common-perllib-genome / util-perllib: shared Perl modules