ASKEM TA-1 SKEMA Demo for December 2022

Install

1. Recommend creating a python virtual environment

   python -m venv <venv_name>

   Activate the venv.

2. Clone the automates repository: https://github.com/ml4ai/automates

   git clone https://github.com/ml4ai/automates.git

3. While in the activated venv, pip install automates: cd into the root of the automates respository and run:

   pip install -e .

4. Clone the skema repository: https://github.com/ml4ai/skema

   git clone https://github.com/ml4ai/skema.git

5. While in the activated venv, pip install skema: cd into the root of the skema repository and run:

   pip install -e .

6. Ensure you have a copy of the following directories under the ASKEM-SKEMA/data google drive:

   • resources/tr/
   • epidemiology/CHIME/CHIME_penn_full_model/

   You will update your local paths to these directories in the demo/skema-demo-2022-Dec.ipynb jupyter notebook.

Run Demo

1. Start the SKEMA Server:

• cd to <skema>/skema/skema/skema-rs/
• docker-compose -f docker-compose.memgraph.yml up --build -d
• cargo run --bin skema_service

2. Launch the demo python notebook:
   <ASKEM-TA1-SKEMA-Demo-2022-12>/demo/skema-demo-2022-Dec.ipynb
   and work through sequentially.