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chore(deps): update all non-major dependencies #372

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Dec 1, 2024
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2 changes: 1 addition & 1 deletion .config/dotnet-tools.json
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
"isRoot": true,
"tools": {
"csharpier": {
"version": "0.29.2",
"version": "0.30.2",
"commands": ["dotnet-csharpier"]
}
}
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10 changes: 5 additions & 5 deletions charts/recruit/Chart.lock
Original file line number Diff line number Diff line change
Expand Up @@ -4,15 +4,15 @@ dependencies:
version: 0.17.1
- name: mailhog
repository: https://codecentric.github.io/helm-charts
version: 5.2.3
version: 5.3.0
- name: ohdsi
repository: oci://ghcr.io/chgl/charts
version: 0.24.12
version: 0.24.26
- name: postgresql
repository: oci://registry-1.docker.io/bitnamicharts
version: 13.2.27
- name: fhir-pseudonymizer
repository: oci://ghcr.io/miracum/charts
version: 0.7.15
digest: sha256:339f783e0f48e30e27a655edbe42af4d6d3c09efcec91063a3ceacae577dbb6a
generated: "2024-10-22T08:51:43.274845629Z"
version: 0.7.36
digest: sha256:04b8e7f7e8990aa7e543d42e9810e4bfd35e38c618f63e0de96220a04f8ba660
generated: "2024-12-01T10:38:51.50298615Z"
6 changes: 3 additions & 3 deletions charts/recruit/Chart.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -26,18 +26,18 @@ dependencies:
- condition: mailhog.enabled
name: mailhog
repository: https://codecentric.github.io/helm-charts
version: 5.2.3
version: 5.3.0
- condition: ohdsi.enabled
name: ohdsi
repository: oci://ghcr.io/chgl/charts
version: 0.24.12
version: 0.24.26
- name: postgresql
version: 13.2.27
repository: oci://registry-1.docker.io/bitnamicharts
condition: postgresql.enabled
- condition: fhir-pseudonymizer.enabled
name: fhir-pseudonymizer
version: 0.7.15
version: 0.7.36
repository: oci://ghcr.io/miracum/charts
# x-release-please-start-version
version: 10.1.12
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2 changes: 1 addition & 1 deletion charts/recruit/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -677,7 +677,7 @@ curl: # +doc-gen:ignore
image:
registry: docker.io
repository: curlimages/curl
tag: 8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b
tag: 8.11.0@sha256:83a505ba2ba62f208ed6e410c268b7b9aa48f0f7b403c8108b9773b44199dbba

broadseaAtlasdb:
# -- whether to deploy the OHDSI Broadsea Atlasdb (<https://github.com/OHDSI/Broadsea-Atlasdb>)
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2 changes: 1 addition & 1 deletion docker-compose/docker-compose.probe.yaml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
services:
health-probes:
image: docker.io/curlimages/curl:8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b
image: docker.io/curlimages/curl:8.11.0@sha256:83a505ba2ba62f208ed6e410c268b7b9aa48f0f7b403c8108b9773b44199dbba
ipc: private
security_opt:
- "no-new-privileges:true"
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4 changes: 2 additions & 2 deletions docker-compose/docker-compose.staging.yaml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
services:
traefik:
image: docker.io/library/traefik:v3.1.6@sha256:f703a2ac2ddf75f6e06c9cccac7f158765e2ab42d642b04e79e2e3d7355c2ddc
image: docker.io/library/traefik:v3.2.1@sha256:1a3e33f976d10f45efd613aa64814867068bf51c782599a70ef370447686291b
restart: unless-stopped
ipc: none
security_opt:
Expand Down Expand Up @@ -102,7 +102,7 @@ services:
- "traefik.http.routers.ohdsi-atlas.entrypoints=web"

fhir:
image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684
image: docker.io/hapiproject/hapi:v7.6.0@sha256:4771a178e764896c83881c1b3a52bd487e53d06e1acc3653ea0db0c6f6b2b8a1
restart: unless-stopped
cap_drop:
- ALL
Expand Down
2 changes: 1 addition & 1 deletion docs/requirements.txt
Original file line number Diff line number Diff line change
@@ -1 +1 @@
mkdocs-material==9.5.42
mkdocs-material==9.5.47
2 changes: 1 addition & 1 deletion src/Dockerfile
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM docker.io/library/gradle:8.10.2-jdk21@sha256:68b2622349ffd414aee2f94901b2d0f6e7b309cfb5550904520e75f5e5ef1053 AS build
FROM docker.io/library/gradle:8.11.1-jdk21@sha256:7990a44ed0ad609ee740426d3becc69ae7d10a5ed14da7e354ad83cf7ef1d087 AS build
WORKDIR /home/gradle/project
ARG OPENTELEMETRY_JAVA_AGENT_VERSION=2.4.0
RUN wget --quiet "https://github.com/open-telemetry/opentelemetry-java-instrumentation/releases/download/v${OPENTELEMETRY_JAVA_AGENT_VERSION}/opentelemetry-javaagent.jar"
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4 changes: 2 additions & 2 deletions src/buildSrc/build.gradle
Original file line number Diff line number Diff line change
Expand Up @@ -15,10 +15,10 @@ repositories {
}

dependencies {
implementation 'org.springframework.boot:spring-boot-gradle-plugin:3.3.4'
implementation 'org.springframework.boot:spring-boot-gradle-plugin:3.4.0'
implementation 'io.spring.gradle:dependency-management-plugin:1.1.6'
implementation 'com.google.cloud.tools:jib-gradle-plugin:3.4.4'
implementation 'com.diffplug.spotless:spotless-plugin-gradle:6.25.0'
implementation 'io.freefair.gradle:lombok-plugin:8.10.2'
implementation 'io.freefair.gradle:lombok-plugin:8.11'
implementation 'de.undercouch:gradle-download-task:5.6.0'
}
Original file line number Diff line number Diff line change
Expand Up @@ -37,19 +37,19 @@ dependencies {
implementation 'org.springframework.boot:spring-boot-starter-jdbc'
implementation 'org.springframework.boot:spring-boot-starter-data-jdbc'

implementation 'ca.uhn.hapi.fhir:hapi-fhir-client:7.4.4'
implementation 'ca.uhn.hapi.fhir:hapi-fhir-base:7.4.4'
implementation 'ca.uhn.hapi.fhir:hapi-fhir-structures-r4:7.4.4'
implementation 'ca.uhn.hapi.fhir:hapi-fhir-client-okhttp:7.4.4'
implementation 'ca.uhn.hapi.fhir:hapi-fhir-client:7.6.0'
implementation 'ca.uhn.hapi.fhir:hapi-fhir-base:7.6.0'
implementation 'ca.uhn.hapi.fhir:hapi-fhir-structures-r4:7.6.0'
implementation 'ca.uhn.hapi.fhir:hapi-fhir-client-okhttp:7.6.0'

implementation 'com.squareup.okhttp3:okhttp:4.12.0'

implementation 'net.logstash.logback:logstash-logback-encoder:8.0'

implementation 'org.postgresql:postgresql:42.7.4'

implementation 'io.micrometer:micrometer-registry-prometheus:1.13.6'
implementation 'io.micrometer:micrometer-core:1.13.6'
implementation 'io.micrometer:micrometer-registry-prometheus:1.14.1'
implementation 'io.micrometer:micrometer-core:1.14.1'

developmentOnly 'org.springframework.boot:spring-boot-devtools'

Expand Down Expand Up @@ -101,7 +101,7 @@ spotless {
}

checkstyle {
toolVersion '10.18.2'
toolVersion '10.20.2'
configFile = file('../config/checkstyle/checkstyle.xml')
}

Expand Down
2 changes: 1 addition & 1 deletion src/gradle/wrapper/gradle-wrapper.properties
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
distributionBase=GRADLE_USER_HOME
distributionPath=wrapper/dists
distributionUrl=https\://services.gradle.org/distributions/gradle-8.10.2-bin.zip
distributionUrl=https\://services.gradle.org/distributions/gradle-8.11.1-bin.zip
networkTimeout=10000
validateDistributionUrl=true
zipStoreBase=GRADLE_USER_HOME
Expand Down
6 changes: 3 additions & 3 deletions src/hack/docker-compose.yaml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
services:
traefik:
image: docker.io/library/traefik:v3.1.6@sha256:f703a2ac2ddf75f6e06c9cccac7f158765e2ab42d642b04e79e2e3d7355c2ddc
image: docker.io/library/traefik:v3.2.1@sha256:1a3e33f976d10f45efd613aa64814867068bf51c782599a70ef370447686291b
restart: unless-stopped
ipc: none
security_opt:
Expand All @@ -23,7 +23,7 @@ services:
memory: 128m

fhir:
image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684
image: docker.io/hapiproject/hapi:v7.6.0@sha256:4771a178e764896c83881c1b3a52bd487e53d06e1acc3653ea0db0c6f6b2b8a1
restart: unless-stopped
cap_drop:
- ALL
Expand Down Expand Up @@ -270,7 +270,7 @@ services:
OTEL_EXPORTER_JAEGER_ENDPOINT: "http://jaeger:14250"

jaeger:
image: docker.io/jaegertracing/all-in-one:1.62.0@sha256:836e9b69c88afbedf7683ea7162e179de63b1f981662e83f5ebb68badadc710f
image: docker.io/jaegertracing/all-in-one:1.63.0@sha256:fd5697c37ba041a91cfca1d62621d32cdeb2041c0febc2f1579e5bac6f21e34b
ports:
- "127.0.0.1:16686:16686"
- "127.0.0.1:6831:6831/udp"
Expand Down
2 changes: 1 addition & 1 deletion src/list/Dockerfile
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM docker.io/library/node:22.10.0-slim@sha256:e09207f9eca57bc0f93f35f5e252f46ce4c8f86cf2ab4ede5e2a75d1dbc9ae74 AS base
FROM docker.io/library/node:22.11.0-slim@sha256:4b44c32c9f3118d60977d0dde5f758f63c4f9eac8ddee4275277239ec600950f AS base
WORKDIR /app

COPY package.json ./
Expand Down
6 changes: 3 additions & 3 deletions src/list/frontend/deploy/docker-compose.dev.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ version: "3.9"

services:
fhir:
image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684
image: docker.io/hapiproject/hapi:v7.6.0@sha256:4771a178e764896c83881c1b3a52bd487e53d06e1acc3653ea0db0c6f6b2b8a1
environment:
HAPI_FHIR_VALIDATION_REQUESTS_ENABLED: "true"
HAPI_FHIR_SUBSCRIPTION_RESTHOOK_ENABLED: "true"
Expand All @@ -14,7 +14,7 @@ services:
- 8082:8080

loader:
image: docker.io/curlimages/curl:8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b
image: docker.io/curlimages/curl:8.11.0@sha256:83a505ba2ba62f208ed6e410c268b7b9aa48f0f7b403c8108b9773b44199dbba
command: >
sh -c "curl -X POST -H 'Content-Type:application/fhir+json' --retry-connrefused --connect-timeout 30 --max-time 60 --retry 5 --retry-delay 15 --data '@/data/sample-record-1.json' http://fhir:8080/fhir &&
curl -X POST -H 'Content-Type:application/fhir+json' --retry-connrefused --connect-timeout 30 --max-time 60 --retry 5 --retry-delay 15 --data '@/data/sample-record-2.json' http://fhir:8080/fhir &&
Expand Down Expand Up @@ -51,7 +51,7 @@ services:
- 8083:8080

fhir-pseudonymizer:
image: ghcr.io/miracum/fhir-pseudonymizer:v2.22.0@sha256:d999debd8191486b14f18fa509f2a89f4148d8a0b7eca0f440c6f41f9e51708e
image: ghcr.io/miracum/fhir-pseudonymizer:v2.22.1@sha256:3f2718f458ba8eb9a18efa81cc0a3829ec0dc1d64ba6f2a1b0cfba0f368300f8
environment:
APIKEY: "fhir-pseudonymizer-api-key"
TRACING__ENABLED: "true"
Expand Down
12 changes: 6 additions & 6 deletions src/list/frontend/package.json
Original file line number Diff line number Diff line change
Expand Up @@ -14,18 +14,18 @@
"@fortawesome/fontawesome-svg-core": "1.2.36",
"@fortawesome/free-solid-svg-icons": "5.15.4",
"@fortawesome/vue-fontawesome": "2.0.10",
"axios": "1.7.7",
"axios": "1.7.8",
"buefy": "0.9.29",
"core-js": "3.38.1",
"csv-stringify": "6.5.1",
"core-js": "3.39.0",
"csv-stringify": "6.5.2",
"fhirclient": "2.5.4",
"fhirpath": "3.15.2",
"vue": "2.7.16",
"vue-router": "3.6.5",
"vuejs-logger": "1.5.5"
},
"devDependencies": {
"@babel/eslint-parser": "7.25.8",
"@babel/eslint-parser": "7.25.9",
"@vue/cli-plugin-babel": "5.0.8",
"@vue/cli-plugin-eslint": "5.0.8",
"@vue/cli-plugin-router": "5.0.8",
Expand All @@ -37,9 +37,9 @@
"cypress-keycloak": "2.0.2",
"eslint": "8.57.1",
"eslint-config-prettier": "9.1.0",
"eslint-plugin-vue": "9.29.1",
"eslint-plugin-vue": "9.32.0",
"jest": "29.7.0",
"sass": "1.80.3",
"sass": "1.81.0",
"sass-loader": "14.2.1",
"vue-template-compiler": "2.7.16",
"pino": "9.5.0"
Expand Down
2 changes: 1 addition & 1 deletion src/list/frontend/tests/e2e/cypress.Dockerfile
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM docker.io/cypress/included:13.15.0@sha256:d2123cf33edc48d3e3f30bd24231459ca5291dcf66b91b0b30b50ffe568eb707
FROM docker.io/cypress/included:13.16.0@sha256:ba38ee9c44462f140b9df5a5c74f62a50e33ffcee17638a95b78ffbeff8eac1e
WORKDIR /root
ENV CI=1

Expand Down
4 changes: 2 additions & 2 deletions src/list/frontend/tests/e2e/docker-compose.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,15 +34,15 @@ services:
- ${PWD}/frontend:/root/e2e

fhir:
image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684
image: docker.io/hapiproject/hapi:v7.6.0@sha256:4771a178e764896c83881c1b3a52bd487e53d06e1acc3653ea0db0c6f6b2b8a1
environment:
HAPI_FHIR_VALIDATION_REQUESTS_ENABLED: "true"
HAPI_FHIR_SUBSCRIPTION_RESTHOOK_ENABLED: "true"
HAPI_FHIR_FHIR_VERSION: "R4"
HAPI_FHIR_CORS_ALLOWED_ORIGIN: "http://list:8080"

loader:
image: docker.io/curlimages/curl:8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b
image: docker.io/curlimages/curl:8.11.0@sha256:83a505ba2ba62f208ed6e410c268b7b9aa48f0f7b403c8108b9773b44199dbba
command: >
sh -c "curl -X POST -H 'Content-Type: application/fhir+json' --retry-connrefused --connect-timeout 30 --max-time 60 --retry 10 --retry-delay 15 --data '@/data/sample-record-1.json' http://fhir:8080/fhir &&
curl -X POST -H 'Content-Type: application/fhir+json' --retry-connrefused --connect-timeout 30 --max-time 60 --retry 10 --retry-delay 15 --data '@/data/sample-record-2.json' http://fhir:8080/fhir &&
Expand Down
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