feat: first version

.github/workflows/ci.yaml

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+name: Build IG
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch: {}
+
+# Declare default permissions as read only.
+permissions: read-all
+
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  deploy:
+    runs-on: ubuntu-22.04
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    permissions:
+      contents: write
+      pages: write
+    container: ghcr.io/miracum/ig-build-tools:v2.0.60@sha256:814931d3ef33fb0ceccbd9dc6253e512eba0be83e7800559ce1cf5fd8cb52114
+    steps:
+      - uses: actions/checkout@a5ac7e51b41094c92402da3b24376905380afc29 # v4.1.6
+      - name: Setup Pages
+        uses: actions/configure-pages@983d7736d9b0ae728b81ab479565c72886d7745b # v5.0.0
+      - name: build ig
+        working-directory: PseudonymizationIG/
+        run: |
+          java -jar /usr/local/bin/publisher.jar -ig ig.ini
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@56afc609e74202658d3ffba0e8f6dda462b719fa # v3.0.1
+        with:
+          # Upload entire repository
+          path: "PseudonymizationIG/output"
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@d6db90164ac5ed86f2b6aed7e0febac5b3c0c03e # v4.0.5
+        if: ${{ github.event_name != 'pull_request' }}

PseudonymizationIG/.gitignore

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+.DS_Store
+Thumbs.db
+/fsh-generated
+/input-cache
+/output
+/temp
+/template

PseudonymizationIG/_genonce.bat

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+@ECHO OFF
+SET publisher_jar=publisher.jar
+SET input_cache_path=%CD%\input-cache
+
+ECHO Checking internet connection...
+PING tx.fhir.org -4 -n 1 -w 1000 | FINDSTR TTL && GOTO isonline
+ECHO We're offline...
+SET txoption=-tx n/a
+GOTO igpublish
+
+:isonline
+ECHO We're online
+SET txoption=
+
+:igpublish
+
+SET JAVA_TOOL_OPTIONS=-Dfile.encoding=UTF-8
+
+IF EXIST "%input_cache_path%\%publisher_jar%" (
+	JAVA -jar "%input_cache_path%\%publisher_jar%" -ig . %txoption% %*
+) ELSE If exist "..\%publisher_jar%" (
+	JAVA -jar "..\%publisher_jar%" -ig . %txoption% %*
+) ELSE (
+	ECHO IG Publisher NOT FOUND in input-cache or parent folder.  Please run _updatePublisher.  Aborting...
+)
+
+PAUSE

PseudonymizationIG/_genonce.sh

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+#!/bin/bash
+publisher_jar=publisher.jar
+input_cache_path=./input-cache/
+echo Checking internet connection...
+curl -sSf tx.fhir.org > /dev/null
+
+if [ $? -eq 0 ]; then
+	echo "Online"
+	txoption=""
+else
+	echo "Offline"
+	txoption="-tx n/a"
+fi
+
+echo "$txoption"
+
+export JAVA_TOOL_OPTIONS="$JAVA_TOOL_OPTIONS -Dfile.encoding=UTF-8"
+
+publisher=$input_cache_path/$publisher_jar
+if test -f "$publisher"; then
+	java -jar $publisher -ig . $txoption $*
+
+else
+	publisher=../$publisher_jar
+	if test -f "$publisher"; then
+		java -jar $publisher -ig . $txoption $*
+	else
+		echo IG Publisher NOT FOUND in input-cache or parent folder.  Please run _updatePublisher.  Aborting...
+	fi
+fi

PseudonymizationIG/_updatePublisher.bat

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+@ECHO OFF
+
+SETLOCAL
+
+SET dlurl=https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar
+SET publisher_jar=publisher.jar
+SET input_cache_path=%CD%\input-cache\
+SET skipPrompts=false
+
+SET scriptdlroot=https://raw.githubusercontent.com/HL7/ig-publisher-scripts/main
+SET update_bat_url=%scriptdlroot%/_updatePublisher.bat
+SET gen_bat_url=%scriptdlroot%/_genonce.bat
+SET gencont_bat_url=%scriptdlroot%/_gencontinuous.bat
+SET gencont_sh_url=%scriptdlroot%/_gencontinuous.sh
+SET gen_sh_url=%scriptdlroot%/_genonce.sh
+SET update_sh_url=%scriptdlroot%/_updatePublisher.sh
+
+IF "%~1"=="/f" SET skipPrompts=y
+
+
+ECHO.
+ECHO Checking internet connection...
+PING tx.fhir.org -4 -n 1 -w 1000 | FINDSTR TTL && GOTO isonline
+ECHO We're offline, nothing to do...
+GOTO end
+
+:isonline
+ECHO We're online
+
+
+:processflags
+SET ARG=%1
+IF DEFINED ARG (
+	IF "%ARG%"=="-f" SET FORCE=true
+	IF "%ARG%"=="--force" SET FORCE=true
+	SHIFT
+	GOTO processflags
+)
+
+FOR %%x IN ("%CD%") DO SET upper_path=%%~dpx
+
+ECHO.
+IF NOT EXIST "%input_cache_path%%publisher_jar%" (
+	IF NOT EXIST "%upper_path%%publisher_jar%" (
+		SET jarlocation="%input_cache_path%%publisher_jar%"
+		SET jarlocationname=Input Cache
+		ECHO IG Publisher is not yet in input-cache or parent folder.
+		REM we don't use jarlocation below because it will be empty because we're in a bracketed if statement
+		GOTO create
+	) ELSE (
+		ECHO IG Publisher FOUND in parent folder
+		SET jarlocation="%upper_path%%publisher_jar%"
+		SET jarlocationname=Parent folder
+		GOTO upgrade
+	)
+) ELSE (
+	ECHO IG Publisher FOUND in input-cache
+	SET jarlocation="%input_cache_path%%publisher_jar%"
+	SET jarlocationname=Input Cache
+	GOTO upgrade
+)
+
+:create
+IF DEFINED FORCE (
+	MKDIR "%input_cache_path%" 2> NUL
+	GOTO download
+)
+
+IF "%skipPrompts%"=="y" (
+	SET create=Y
+) ELSE (
+	SET /p create="Ok? (Y/N) "
+)
+IF /I "%create%"=="Y" (
+	ECHO Will place publisher jar here: %input_cache_path%%publisher_jar%
+	MKDIR "%input_cache_path%" 2> NUL
+	GOTO download
+)
+GOTO done
+
+:upgrade
+IF "%skipPrompts%"=="y" (
+	SET overwrite=Y
+) ELSE (
+	SET /p overwrite="Overwrite %jarlocation%? (Y/N) "
+)
+
+IF /I "%overwrite%"=="Y" (
+	GOTO download
+)
+GOTO done
+
+:download
+ECHO Downloading most recent publisher to %jarlocationname% - it's ~100 MB, so this may take a bit
+
+FOR /f "tokens=4-5 delims=. " %%i IN ('ver') DO SET VERSION=%%i.%%j
+IF "%version%" == "10.0" GOTO win10
+IF "%version%" == "6.3" GOTO win8.1
+IF "%version%" == "6.2" GOTO win8
+IF "%version%" == "6.1" GOTO win7
+IF "%version%" == "6.0" GOTO vista
+
+ECHO Unrecognized version: %version%
+GOTO done
+
+:win10
+CALL POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%dlurl%\",\"%jarlocation%\") } else { Invoke-WebRequest -Uri "%dlurl%" -Outfile "%jarlocation%" }
+
+GOTO done
+
+:win7
+rem this may be triggering the antivirus - bitsadmin.exe is a known threat
+rem CALL bitsadmin /transfer GetPublisher /download /priority normal "%dlurl%" "%jarlocation%"
+
+rem this didn't work in win 10
+rem CALL Start-BitsTransfer /priority normal "%dlurl%" "%jarlocation%"
+
+rem this should work - untested
+call (New-Object Net.WebClient).DownloadFile('%dlurl%', '%jarlocation%')
+GOTO done
+
+:win8.1
+:win8
+:vista
+GOTO done
+
+
+
+:done
+
+
+
+
+ECHO.
+ECHO Updating scripts
+IF "%skipPrompts%"=="y" (
+	SET updateScripts=Y
+) ELSE (
+	SET /p updateScripts="Update scripts? (Y/N) "
+)
+IF /I "%updateScripts%"=="Y" (
+	GOTO scripts
+)
+GOTO end
+
+
+:scripts
+
+REM Download all batch files (and this one with a new name)
+
+SETLOCAL DisableDelayedExpansion
+
+
+
+:dl_script_1
+ECHO Updating _updatePublisher.sh
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%update_sh_url%\",\"_updatePublisher.new.sh\") } else { Invoke-WebRequest -Uri "%update_sh_url%" -Outfile "_updatePublisher.new.sh" }
+if %ERRORLEVEL% == 0 goto upd_script_1
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_2
+:upd_script_1
+start copy /y "_updatePublisher.new.sh" "_updatePublisher.sh" ^&^& del "_updatePublisher.new.sh" ^&^& exit
+
+
+:dl_script_2
+ECHO Updating _genonce.bat
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%gen_bat_url%\",\"_genonce.new.bat\") } else { Invoke-WebRequest -Uri "%gen_bat_url%" -Outfile "_genonce.bat" }
+if %ERRORLEVEL% == 0 goto upd_script_2
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_3
+:upd_script_2
+start copy /y "_genonce.new.bat" "_genonce.bat" ^&^& del "_genonce.new.bat" ^&^& exit
+
+:dl_script_3
+ECHO Updating _gencontinuous.bat
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%gencont_bat_url%\",\"_gencontinuous.new.bat\") } else { Invoke-WebRequest -Uri "%gencont_bat_url%" -Outfile "_gencontinuous.bat" }
+if %ERRORLEVEL% == 0 goto upd_script_3
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_4
+:upd_script_3
+start copy /y "_gencontinuous.new.bat" "_gencontinuous.bat" ^&^& del "_gencontinuous.new.bat" ^&^& exit
+
+
+:dl_script_4
+ECHO Updating _genonce.sh
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%gen_sh_url%\",\"_genonce.new.sh\") } else { Invoke-WebRequest -Uri "%gen_sh_url%" -Outfile "_genonce.sh" }
+if %ERRORLEVEL% == 0 goto upd_script_4
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_5
+:upd_script_4
+start copy /y "_genonce.new.sh" "_genonce.sh" ^&^& del "_genonce.new.sh" ^&^& exit
+
+:dl_script_5
+ECHO Updating _gencontinuous.sh
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%gencont_sh_url%\",\"_gencontinuous.new.sh\") } else { Invoke-WebRequest -Uri "%gencont_sh_url%" -Outfile "_gencontinuous.sh" }
+if %ERRORLEVEL% == 0 goto upd_script_5
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_6
+:upd_script_5
+start copy /y "_gencontinuous.new.sh" "_gencontinuous.sh" ^&^& del "_gencontinuous.new.sh" ^&^& exit
+
+
+
+:dl_script_6
+ECHO Updating _updatePublisher.bat
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%update_bat_url%\",\"_updatePublisher.new.bat\") } else { Invoke-WebRequest -Uri "%update_bat_url%" -Outfile "_updatePublisher.new.bat" }
+if %ERRORLEVEL% == 0 goto upd_script_6
+echo "Errors encountered during download: %errorlevel%"
+goto end
+:upd_script_6
+start copy /y "_updatePublisher.new.bat" "_updatePublisher.bat" ^&^& del "_updatePublisher.new.bat" ^&^& exit
+
+
+:end
+
+
+IF "%skipPrompts%"=="true" (
+  PAUSE
+)