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CFA Round 18 Submission #251

CFA Round 18 Submission

CFA Round 18 Submission #251

Workflow file for this run

name: Validate and Visualize Submission
on:
pull_request_target:
types: [synchronize, opened, reopened]
branches:
- master
paths:
- 'data-processed/**.parquet'
jobs:
validates-files:
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v3
with:
fetch-depth: 1
sparse-checkout: |
.github
code
hub-config
data-locations
- name: Setup R
uses: r-lib/actions/setup-r@v2
- name: Install system dependencies
run: sudo apt-get install libcurl4-openssl-dev libudunits2-dev libgdal-dev
- name: Cache R packages
id: cache
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/requirements.txt') }}-1
- name: Install dependencies
if: ( steps.cache.outputs.cache-hit != 'true' )
run: |
R -e 'Sys.setenv("NOT_CRAN" = TRUE)
install.packages(c("arrow", "gh", "remotes"))
Sys.unsetenv("NOT_CRAN")
remotes::install_url("https://github.com/midas-network/SMHvalidation/archive/refs/heads/main.zip")
remotes::install_url("https://github.com/Infectious-Disease-Modeling-Hubs/hubUtils/archive/refs/heads/main.zip")'
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
- name: Run Validation - Open/reopen
if: ( github.event.action != 'synchronize' )
run: |
Rscript code/validation/validation.R
env:
GH_PR_NUMBER: ${{ github.event.pull_request.number }}
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Run Validation - Synchronize
if: ( github.event.action == 'synchronize' )
run: |
Rscript code/validation/validation.R
env:
GH_PR_NUMBER: ${{ github.event.pull_request.number }}
GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
GH_COMMIT_SHA: ${{ github.event.pull_request.head.sha }}
- name: Upload Projection Plot as Artifact
uses: actions/upload-artifact@v3
if: always()
with:
name: validation_plot_${{ github.event.pull_request.number }}
path: ./proj_plot/*
if-no-files-found: ignore