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µManager

Micro-Manager

Micro-Manager started out as an application to control microscope hardware, such as cameras, xy-stages, filter wheels, etc. It includes a hardware abstraction layer written in C++ that is now used in several projects including the original user interface written in Java that is distributed as an ImageJ plugin.

Go to micro-manager.org for documentation and binary downloads.

For support, see Micro-Manager Community.

The Micro-Manager community welcomes you! For our governance structures, go here

Repositories

Python compatility

Several projects provide access to Micro-Manager code from Python. Pycro-manager creates an interprocess bridge between the "classical" Micro-Manger running in a Java Virtual Machine and Python. Pymmcore exports the MMCore interface directly to Python. Pymmcore is used by various Python packages such as pymmcore-plus, located in a github organization that contains several User Interfaces witten in Python to interface with MMCore (pymmcore-widgets, napari-micro-manager).

Contributing

Start here.

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  1. micro-manager micro-manager Public

    Microscope control and image acquisition integrated with ImageJ

    Java 260 231

  2. pycro-manager pycro-manager Public

    Python control of micro-manager for customized data acquisition

    Jupyter Notebook 165 52

  3. mmCoreAndDevices mmCoreAndDevices Public

    Micro-Manager's device control layer, written in C++

    C++ 44 111

  4. micro-manager.github.io micro-manager.github.io Public

    Micro-Manager website source

    JavaScript 7 40

  5. pymmcore pymmcore Public

    Python bindings for MMCore, Micro-Manager's device control layer

    Python 33 8

  6. futureMMCore futureMMCore Public

    Place to discuss the future design of a universal microscope hardware interface

    15 1

Repositories

Showing 10 of 22 repositories
  • micro-manager Public

    Microscope control and image acquisition integrated with ImageJ

    micro-manager/micro-manager’s past year of commit activity
    Java 260 231 123 (1 issue needs help) 11 Updated Dec 27, 2024
  • mmCoreAndDevices Public

    Micro-Manager's device control layer, written in C++

    micro-manager/mmCoreAndDevices’s past year of commit activity
    C++ 44 111 78 17 Updated Dec 27, 2024
  • apidoc Public

    API documentation site for Micro-Manager

    micro-manager/apidoc’s past year of commit activity
    Shell 0 0 1 0 Updated Dec 20, 2024
  • micro-manager/LightSheetManager’s past year of commit activity
    Java 0 BSD-3-Clause 3 5 0 Updated Dec 19, 2024
  • micro-manager.github.io Public

    Micro-Manager website source

    micro-manager/micro-manager.github.io’s past year of commit activity
    JavaScript 7 40 14 0 Updated Dec 15, 2024
  • pycro-manager Public

    Python control of micro-manager for customized data acquisition

    micro-manager/pycro-manager’s past year of commit activity
    Jupyter Notebook 165 BSD-3-Clause 52 17 (2 issues need help) 0 Updated Dec 10, 2024
  • ExEngine Public

    Execution engine for microscope control

    micro-manager/ExEngine’s past year of commit activity
    Python 7 BSD-3-Clause 3 5 1 Updated Nov 21, 2024
  • .github Public

    Repository to manage organization's visibility

    micro-manager/.github’s past year of commit activity
    0 0 0 0 Updated Oct 9, 2024
  • pymmcore Public

    Python bindings for MMCore, Micro-Manager's device control layer

    micro-manager/pymmcore’s past year of commit activity
    Python 33 LGPL-2.1 8 6 3 Updated Oct 8, 2024
  • mmpycorex Public

    Python package for unified MMCore access through pymmcore or ZMQ-MMCoreJ + associated utilities

    micro-manager/mmpycorex’s past year of commit activity
    Python 1 BSD-3-Clause 1 0 0 Updated Aug 26, 2024