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Meeting Monday at 1:00-2:00, usually in PBB 118, see below.

Links:

• Zoom
• Syllabus
• Feedback Form - Fill out for each presenter.

Schedule

January 22 (PBB 118)

OFF FOR SNOW.

January 29 (Class 1) (PBB 118)

To Dos:

• Review syllabus
• Go over review paper: Sherman & Salzberg 2020. Pan-genomics in the human genome era
• Pick dates to present

February 5 (Class 2) (PBB 118)

• Presenter: Meaghan Adler
• Paper: McCarthy & Fitzpatrick 2019. Pan-genome analyses of model fungal species

February 12 (Class 3) (Zoom only)

• Presenter: Shade Niece
• Paper: Drott et al. 2023. Pangenomics of the death cap mushroom Amanita phalloides, and of Agaricales, reveals dynamic evolution of toxin genes in an invasive range

February 19 (Class 4) (PBB 118)

• Presenter: Cheng Chen
• Paper: Garrisona nd Guarracino 2023. Unbiased pangenome graphs

February 26 (Class 5) (PBB 118)

• Presenter: Zane Smith
• Paper: Gordon et al. 2020. Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

March 4 (Class 6) (PBB 118)

• Presenter: Allyson Dekovitch
• Paper: Li et al. 2023 Pan-genome analysis highlights the role of structural variation in the evolution and environmental adaptation of Asian honeybees

March 11 (SPRING BREAK)

March 18 (Class 7) (PBB 118)

• Presenter: Emily Bowden
• Paper: Delmont and Eren. 2018 Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

March 25 (Class 8) (PBB 118)

• Presenter: Katelyn Houghton
• Paper: Cai et al 2023. Microcystis pangenome reveals cryptic diversity within and across morphospecies

April 1 (Class 9) (PBB 118)

• Presenter: Jackson Turner
• Paper: Karkouri et al 2022. Genomic evolution and adaptation of arthropod-associated Rickettsia

April 8 (Class 10) (PBB 118)

• Presenter: Katelyn & Emily
• Paper:

April 15 (NO CLASS)

April 22 (Class 11) (PBB 118)

• Presenter: Meaghan, Shade and Zane
• Paper:

April 29 (Class 12) (PBB 118)

• Presenter: Allyson & Jackson
• Paper:

May 6 (Class 13) (PBB 118)

• Presenter: Cheng and Patrick (and Ryan and Beant, citrus group from Meg's lab)
• Paper:

No Exam

Previous Journal Clubs

• 2020 Course
• 2021 Course