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Meg Staton edited this page Apr 30, 2024
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Welcome to the EPP604 wiki!
Meeting Monday at 1:00-2:00, usually in PBB 118, see below.
Links:
- Zoom
- Syllabus
- Feedback Form - Fill out for each presenter.
OFF FOR SNOW.
To Dos:
- Review syllabus
- Go over review paper: Sherman & Salzberg 2020. Pan-genomics in the human genome era
- Pick dates to present
- Presenter: Meaghan Adler
- Paper: McCarthy & Fitzpatrick 2019. Pan-genome analyses of model fungal species
- Presenter: Shade Niece
- Paper: Drott et al. 2023. Pangenomics of the death cap mushroom Amanita phalloides, and of Agaricales, reveals dynamic evolution of toxin genes in an invasive range
- Presenter: Cheng Chen
- Paper: Garrisona nd Guarracino 2023. Unbiased pangenome graphs
- Presenter: Zane Smith
- Paper: Gordon et al. 2020. Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
- Presenter: Allyson Dekovitch
- Paper: Li et al. 2023 Pan-genome analysis highlights the role of structural variation in the evolution and environmental adaptation of Asian honeybees
- Presenter: Emily Bowden
- Paper: Delmont and Eren. 2018 Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
- Presenter: Katelyn Houghton
- Paper: Cai et al 2023. Microcystis pangenome reveals cryptic diversity within and across morphospecies
- Presenter: Jackson Turner
- Paper: Karkouri et al 2022. Genomic evolution and adaptation of arthropod-associated Rickettsia
- Presenter: Katelyn & Emily
- Paper: Maistrenko 2020 Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
- Presenter: Meaghan, Shade and Zane
- Paper: Contreras-Moreira 2023. GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation
- Presenter: Allyson & Jackson
- Paper: High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation
- Presenter: Cheng and Patrick (and Ryan and Beant, citrus group from Meg's lab)
- Paper: A draft human pangenome reference