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htslib: update to 1.21 #7223

htslib: update to 1.21

htslib: update to 1.21 #7223

Workflow file for this run

name: Sanity checks
on: [push, pull_request]
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref }}
cancel-in-progress: true
jobs:
Ubuntu:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Install packages
run: |
sudo apt-get update
sudo apt-get -y install build-essential python3-pip ninja-build
python3 -m pip install --pre meson
- name: Sanity Checks
run: |
./tools/fake_tty.py ./tools/sanity_checks.py
Alpine:
runs-on: ubuntu-latest
strategy:
matrix:
platform: ['x86', 'riscv64', 'ppc64le', 'armv7']
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- uses: jirutka/setup-alpine@v1
with:
arch: ${{matrix.platform}}
packages: >
binutils clang libc-dev fortify-headers make patch cmake git linux-headers pkgconf py3-pip samurai sudo
- name: Sanity Checks
run: |
# Work around PEP 668 nonsense…
sudo rm -vf /usr/lib*/python3.*/EXTERNALLY-MANAGED
python -m pip install --pre meson
./tools/fake_tty.py ./tools/sanity_checks.py
shell: alpine.sh {0}
VisualStudio:
runs-on: windows-latest
strategy:
fail-fast: false
matrix:
platform: ['x64', 'x86']
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
# Install a 32-bit Python so building related stuff work.
- name: Setup x86 Python
if: matrix.platform == 'x86'
uses: actions/setup-python@v5
with:
architecture: 'x86'
python-version: '3.12'
# https://github.com/actions/runner-images/issues/5459#issuecomment-1532856844
- name: Remove bad Strawberry Perl patch binary in search path
run: del C:\Strawberry\c\bin\patch.EXE
- name: Install packages
run: |
python -m pip install --pre meson
- uses: ilammy/msvc-dev-cmd@v1
with:
arch: ${{matrix.platform}}
- name: Sanity Checks
run: |
python tools/sanity_checks.py
VisualStudio-clang-cl:
runs-on: windows-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
# https://github.com/actions/runner-images/issues/5459#issuecomment-1532856844
- name: Remove bad Strawberry Perl patch binary in search path
run: del C:\Strawberry\c\bin\patch.EXE
- name: Install packages
run: |
python -m pip install --pre meson
- uses: ilammy/msvc-dev-cmd@v1
- name: Sanity Checks
env:
CC: clang-cl
CXX: clang-cl
run: |
python tools/sanity_checks.py
MSYS2:
runs-on: windows-latest
strategy:
fail-fast: false
matrix:
platform: ['UCRT64', 'CLANG64']
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- uses: msys2/setup-msys2@v2
with:
msystem: ${{matrix.platform}}
install: >-
bison
dos2unix
git
pacboy: >-
cc:p
cmake:p
ninja:p
pkgconf:p
python-certifi:p
python-pip:p
# Make sure Python is updated to >=3.11 (fix https://github.com/msys2/MINGW-packages/issues/17415).
update: true
- name: Install packages
shell: msys2 {0}
run: |
python -m pip install --pre meson
- name: Sanity Checks
shell: msys2 {0}
run: |
python tools/sanity_checks.py
MacOS:
runs-on: ${{ matrix.platform == 'arm64' && 'macos-14' || 'macos-13' }}
strategy:
fail-fast: false
matrix:
platform: ['arm64', 'x86_64']
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- run: brew update
- uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: Install packages
run: |
brew install ninja
python3 -m pip install --pre meson
- name: Sanity Checks
run: |
./tools/fake_tty.py ./tools/sanity_checks.py