Backport PR scverse#1100 on branch 0.9.x (Fix benchmarks and pandas c…

…ompat) (scverse#1103)
meeseeksmachine · Aug 21, 2023 · f6d0ae7 · f6d0ae7
1 parent 5b3d23f
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diff --git a/anndata/tests/test_views.py b/anndata/tests/test_views.py
@@ -113,6 +113,14 @@ def test_views():
     assert adata_subset.obs["foo"].tolist() == list(range(2))
 
 
+def test_view_subset_shapes():
+    adata = gen_adata((20, 10), **GEN_ADATA_DASK_ARGS)
+
+    view = adata[:, ::2]
+    assert view.var.shape == (5, 8)
+    assert {k: v.shape[0] for k, v in view.varm.items()} == {k: 5 for k in view.varm}
+
+
 def test_modify_view_component(matrix_type, mapping_name):
     adata = ad.AnnData(
         np.zeros((10, 10)),

diff --git a/pyproject.toml b/pyproject.toml
@@ -36,7 +36,9 @@ classifiers = [
     "Topic :: Scientific/Engineering :: Visualization",
 ]
 dependencies = [
-    "pandas>=1.1.1,!=2.0.1",  # pandas <1.1.1 has pandas/issues/35446
+    # pandas <1.1.1 has pandas/issues/35446
+    # pandas 2.1.0rc0 has pandas/issues/54622
+    "pandas >=1.1.1, !=2.1.0rc0",
     "numpy>=1.16.5",  # required by pandas 1.x
     "scipy>1.4",
     "h5py>=3",