bugfix for identifiers webservice

matthiaskoenig · Jul 25, 2023 · f9fa236 · f9fa236
1 parent b750c74
commit f9fa236
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diff --git a/release-notes/0.3.9.md b/release-notes/0.3.9.md
@@ -0,0 +1,10 @@
+# Release notes for pymetadata 0.3.9
+![pymetadata](https://github.com/matthiaskoenig/pymetadata/raw/develop/docs/images/favicon/pymetadata-100x100-300dpi.png)
+
+We are pleased to release the next version of pymetadata including the 
+following changes:
+
+## Features
+- bugfixes for changing identifiers web service
+
+Your pymetadata team
diff --git a/src/pymetadata/core/annotation.py b/src/pymetadata/core/annotation.py
@@ -100,7 +100,6 @@ def __init__(self, qualifier: Union[BQB, BQM], resource: str):
         elif resource.startswith("urn:miriam:"):
             match3 = MIRIAM_URN_PATTERN.match(resource)
             if match3:
-
                 tokens = match3.group(1).split(":")
                 self.collection = tokens[0]
                 self.term = ":".join(tokens[1:]).replace("%3A", ":")
@@ -240,7 +239,6 @@ def __init__(self, annotation: RDFAnnotation):
         self.errors: List = []
 
         if self.collection:
-
             # register MIRIAM xrefs
             namespace = REGISTRY.ns_dict.get(self.collection, None)
             if not namespace:
@@ -254,7 +252,6 @@ def __init__(self, annotation: RDFAnnotation):
                 namespace.resources = []
 
             for ns_resource in namespace.resources:
-
                 # create url
                 url = ns_resource.urlPattern
 

diff --git a/src/pymetadata/identifiers/registry.py b/src/pymetadata/identifiers/registry.py
@@ -37,6 +37,10 @@ class Resource:
     location: dict = field(repr=False)
     deprecated: bool = field(repr=False)
     deprecationDate: str = field(repr=False)
+    protectedUrls: bool = field(repr=False, default=False)
+    renderProtectedLanding: bool = field(repr=False, default=False)
+    authHelpUrl: Optional[str] = field(repr=False, default=None)
+    authHelpDescription: Optional[str] = field(repr=False, default=None)
 
 
 @dataclass

diff --git a/src/pymetadata/ontologies/ontology.py b/src/pymetadata/ontologies/ontology.py
@@ -160,7 +160,6 @@ def update_ontology_file(ofile: OntologyFile) -> None:
             r.raise_for_status()
             with open(owl_path, "wb") as f:
                 for chunk in r.iter_content(chunk_size=8192):
-
                     f.write(chunk)
 
         # only store gzip version