Update README.md #219
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| # BSD 3-Clause License | |
| # Copyright (c) 2022, Brookhaven Science Associates, LLC, Brookhaven National Laboratory | |
| # All rights reserved. | |
| # Redistribution and use in source and binary forms, with or without | |
| # modification, are permitted provided that the following conditions are met: | |
| # 1. Redistributions of source code must retain the above copyright notice, this | |
| # list of conditions and the following disclaimer. | |
| # 2. Redistributions in binary form must reproduce the above copyright notice, | |
| # this list of conditions and the following disclaimer in the documentation | |
| # and/or other materials provided with the distribution. | |
| # 3. Neither the name of the copyright holder nor the names of its contributors | |
| # may be used to endorse or promote products derived from this software | |
| # without specific prior written permission. | |
| # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" | |
| # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | |
| # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE | |
| # DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE | |
| # FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL | |
| # DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR | |
| # SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER | |
| # CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, | |
| # OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE | |
| # OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | |
| # This CI file is adapted from github.com/AI-multimodal/Lightshow | |
| # Permalink: https://github.com/AI-multimodal/Lightshow/blob/f7d2d6458bf7532994d4f2fe2ffdfe6d2627bdd7/.github/workflows/ci.yml | |
| name: CI | |
| on: | |
| pull_request: | |
| branches: ['master', '!paper.md'] | |
| push: | |
| branches: ['master', '!paper.md'] | |
| tags: ["v*"] | |
| jobs: | |
| black: | |
| name: Run Black code quality check | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: rickstaa/action-black@v1 | |
| with: | |
| black_args: "ggce/ --check" | |
| fail_on_error: "true" | |
| flake8_py3: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Install flake8 | |
| run: pip install flake8 | |
| - name: Run flake8 | |
| uses: suo/flake8-github-action@releases/v1 | |
| with: | |
| checkName: 'flake8_py3' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| check_semantic_version_placeholder: | |
| name: Check semantic version placeholder exists in the __init__ | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Check lines exist | |
| run: | | |
| grep -x "__version__ = ... # semantic-version-placeholder" ggce/__init__.py | |
| docs: | |
| name: Build documentation test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| ########################################################################### | |
| # Getting the tags like this is REQUIRED for the dynamic versioning | |
| # system to work properly | |
| - name: Get tags | |
| if: "! startsWith(github.ref, 'refs/tags')" | |
| run: git fetch --unshallow --tags | |
| ########################################################################### | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Install and build | |
| run: bash scripts/build_docs.sh | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.7, 3.8, 3.9, "3.10", 3.11] | |
| mpi: ["openmpi"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install requirements | |
| run: | | |
| bash scripts/install.sh | |
| bash scripts/install.sh test | |
| - name: Run serial tests | |
| run: pytest -v --cov --cov-report xml --cov-append ggce/_tests/*.py | |
| - name: Setup MPI | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: ${{ matrix.mpi }} | |
| - name: Install mpi4py and pytest-mpi | |
| run: pip install mpi4py pytest-mpi | |
| - name: Run MPI tests | |
| run: mpiexec -n 2 coverage run --rcfile=ggce/_tests/mpi/setup_pytest_mpi.cfg -m pytest -v --with-mpi ggce/_tests/mpi/*.py | |
| # - name: Combine coverage reports from all ranks and generate xml report | |
| # run: coverage combine && coverage xml | |
| # - name: Upload code coverage | |
| # uses: codecov/codecov-action@v2 | |
| # timeout-minutes: 10 | |
| # with: | |
| # token: ${{ secrets.CODECOV_TOKEN }} | |
| # fail_ci_if_error: false | |
| build_and_publish: | |
| name: Build and publish to PyPI | |
| environment: deploy | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| needs: | |
| - tests | |
| - black | |
| - flake8_py3 | |
| - check_semantic_version_placeholder | |
| - docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Build and apply version | |
| run: bash scripts/build_project.sh | |
| - name: Publish distribution to Test PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| repository_url: https://upload.pypi.org/legacy/ | |
| build_and_publish_docs: | |
| name: Build and publish documentation via GitHub Pages | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| needs: | |
| - tests | |
| - black | |
| - flake8_py3 | |
| - check_semantic_version_placeholder | |
| - docs | |
| - build_and_publish | |
| # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| # Allow one concurrent deployment | |
| concurrency: | |
| group: "pages" | |
| cancel-in-progress: true | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Build and apply version | |
| run: | | |
| bash scripts/build_docs.sh | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v2 | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v1 | |
| with: | |
| path: 'docs/build/html/' | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v1 |