GitHub - matt-j-harvey/Widefield_Preprocessing: Code for preprocessing widefield calcium imaging data, including heamocorrection and calculation of delta F/F

matt-j-harvey / Widefield_Preprocessing Public

Code for preprocessing widefield calcium imaging data, including heamocorrection and calculation of delta F/F

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Name		Name	Last commit message	Last commit date
Latest commit History 24 Commits
.idea		.idea
Allen_Atlas_Templates		Allen_Atlas_Templates
Brain_Alignment		Brain_Alignment
__pycache__		__pycache__
Convert_DF_To_Tables.py		Convert_DF_To_Tables.py
Create_Downsampled_Comparison_Video.py		Create_Downsampled_Comparison_Video.py
Create_Downsampled_Mask_Dict.py		Create_Downsampled_Mask_Dict.py
Create_Mousecam_Widefield_Sample_Video.py		Create_Mousecam_Widefield_Sample_Video.py
Create_Raw_Data_Movie.py		Create_Raw_Data_Movie.py
Downsample_Existing_Data.py		Downsample_Existing_Data.py
Downsample_to_100.py		Downsample_to_100.py
Downsampled_Delta_F_With_Regression.py		Downsampled_Delta_F_With_Regression.py
Get_Example_Images.py		Get_Example_Images.py
Get_Max_Projection.py		Get_Max_Projection.py
Heamocorrection_From_Server_Linux.py		Heamocorrection_From_Server_Linux.py
Motion_Correction.py		Motion_Correction.py
Position_Mask.py		Position_Mask.py
Preprocessing_Utils.py		Preprocessing_Utils.py
Run_Heamocorrection_Pipeline.py		Run_Heamocorrection_Pipeline.py
Run_Motion_Correction_Pipeline.py		Run_Motion_Correction_Pipeline.py
Widefield_General_Functions.py		Widefield_General_Functions.py
svt_checking.py		svt_checking.py