Fix recover_offline error: replace deprecated count() with countDocum…

fireworks/core/launchpad.py

@@ -203,10 +203,11 @@ def __init__(
                 raise ValueError("Must specify a database name when using a MongoDB URI string.")
             self.db = self.connection[self.name]
         else:
+            if not "socketTimeoutMS" in self.mongoclient_kwargs:
+                self.mongoclient_kwargs["socketTimeoutMS"] = MONGO_SOCKET_TIMEOUT_MS
             self.connection = MongoClient(
                 self.host,
                 self.port,
-                socketTimeoutMS=MONGO_SOCKET_TIMEOUT_MS,
                 username=self.username,
                 password=self.password,
                 authSource=self.authsource,

fireworks/flask_site/static/css/styles.css

@@ -19,8 +19,8 @@ footer .navbar .nav {
 .pull-up { margin-bottom: 30px;}
 
 .fw-link {
-	border-bottom: 1px dotted;
-	margin-left: 10px;
+  border-bottom: 1px dotted; /* Dotted underline */
+  margin-left: 10px; /* Left margin */
 }
 
 .table td{
@@ -122,3 +122,20 @@ form.query button[type=submit] {
 hr.myhrline{
  margin:5px;
 }
+
+.wf-name strong {
+  display: inline-block;
+  max-width: 150px; /* Adjust maximum width as needed */
+  white-space: nowrap; /* Prevent text from wrapping */
+  overflow: hidden; /* Hide the overflowed part */
+  text-overflow: ellipsis; /* Show ellipsis for overflowed text */
+  vertical-align: bottom;
+}
+
+.wf-name {
+  text-decoration: none; /* Remove underline from the link */
+}
+
+.wf-name strong:hover {
+  cursor: pointer; /* Change cursor to pointer on hover */
+}

fireworks/flask_site/templates/home.html

@@ -23,21 +23,22 @@
                     <td>
                         <div class="row pull-down-sm">
                             <div class="span2">
-                                <a href="/wf/{{ wf.id }}"><strong>{{ wf.name }}</strong></a>
+                                <a href="/wf/{{ wf.id }}" class="wf-name" title="{{ wf.name }}">
+                                    <strong>{{ wf.name }}</strong>
+                                </a>
                             </div>
                             <div class="span3">
                                 <span class="label {{wf.state}}">{{wf.state}}</span>
                                 <span class="pull-right">
                                     ID: <a href="/wf/{{ wf.id }}">{{ wf.id }}</a>
                                 </span>
                             </div>
-
                         </div>
                         <hr>
                         <div class="pull-up">
                             {% for fw  in wf.fireworks %}
                             <div>
-                                <small><a class="fw-link {{fw.state}}" href="/fw/{{ fw.fw_id }}">{{fw.name}}</a></small>
+                                <small><a class="fw-link {{fw.state}}" href="/fw/{{ fw.fw_id }}" title="{{fw.name}}">{{fw.name}}</a></small>
                             </div>
                             {% endfor %}
                         </div>

fireworks/scripts/lpad_run.py

@@ -752,7 +752,7 @@ def recover_offline(args: Namespace) -> None:
     recovered_fws = []
 
     for launch in lp.offline_runs.find({"completed": False, "deprecated": False}, {"launch_id": 1, "fw_id": 1}):
-        if fworker_name and lp.launches.count({"launch_id": launch["launch_id"], "fworker.name": fworker_name}) == 0:
+        if fworker_name and lp.launches.count_documents({"launch_id": launch["launch_id"], "fworker.name": fworker_name}) == 0:
             continue
         fw = lp.recover_offline(launch["launch_id"], args.ignore_errors, args.print_errors)
         if fw:
@@ -1415,9 +1415,16 @@ def lpad(argv: Sequence[str] | None = None) -> int:
     recover_parser.set_defaults(func=recover_offline)
 
     forget_parser = subparsers.add_parser("forget_offline", help="forget offline workflows")
+    forget_parser.add_argument(*fw_id_args, **fw_id_kwargs)
     forget_parser.add_argument("-n", "--name", help="name")
     forget_parser.add_argument(*state_args, **state_kwargs)
     forget_parser.add_argument(*query_args, **query_kwargs)
+    forget_parser.add_argument(*launches_mode_args, **launches_mode_kwargs)    
+    forget_parser.add_argument(
+        "--password",
+        help="Today's date, e.g. 2012-02-25. Password or positive response to "
+        f"input prompt required when modifying more than {PW_CHECK_NUM} entries.",
+    )    
     forget_parser.set_defaults(func=forget_offline)
 
     # admin commands

fireworks/user_objects/queue_adapters/common_adapter.py

@@ -251,7 +251,7 @@ def get_njobs_in_queue(self, username=None):
 
         # run qstat
         qstat = Command(self._get_status_cmd(username))
-        p = qstat.run(timeout=self.timeout, shell=True)
+        p = qstat.run(timeout=self.timeout)
 
         # parse the result
         if p[0] == 0: