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Update README.md
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smilesun authored Oct 10, 2023
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Expand Up @@ -46,6 +46,23 @@ pip install -r requirements_notorch.txt
conda install tensorboard
```

#### Download PACS

step 1:

use the following script to download PACS to your local laptop and upload it to your cluster

https://github.com/marrlab/DomainLab/blob/fbopt/data/script/download_pacs.py

step 2:
make a symbolic link following the example script in https://github.com/marrlab/DomainLab/blob/master/sh_pacs.sh

where `mkdir -p data/pacs` is executed under the repository directory,

`ln -s /dir/to/yourdata/pacs/raw ./data/pacs/PACS`
will create a symbolic link under the repository directory


#### Windows installation details

To install DomainLab on Windows, please remove the `snakemake` dependency from the `requirements.txt` file.
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