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Update and rename nci_gadi.md to how_to_setup.md
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mantczakaus authored Nov 22, 2023
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Expand Up @@ -7,29 +7,16 @@ description:
## Access to HPC

## Create Personal Access Token
<details>
<summary>
Lyra, Gadi and Setonix (Nextflow Tower)
</summary>
#### Lyra, Gadi and Setonix (Nextflow Tower)
You will need the authentication token for running Tower Agent (Gadi, Setonix) and to direct monitoring of the pipeline to Nextflow Tower (Lyra). The authentication token can be created in `Your tokens` section of your profile in Nextflow Tower.<br>
![Token](./images/token.png)
<br>
More information on the authentication can be found in the Nextflow Tower documentation: [Authentication (Seqera)](https://help.tower.nf/23.2/api/overview/#authentication) and [Create Personal Token (Australian BioCommons)](https://docs.google.com/document/d/1DZ-dsaDjiM8bVo4VifPAXP7Nah7V7mHlluijb3KYj8E/edit#heading=h.ar0302xrqom4).
</details>

### Add Credentials for Tower Agent
<details>
<summary>
Gadi and Setonix (Nextflow Tower)
</summary>
</details>

<details>
<summary>
Lyra
</summary>
You are only allowed to monitor jobs using Nextflow Tower on Lyra and that does not require running the Tower Agent.
</details>
## Add Credentials for Tower Agent
#### Gadi and Setonix (Nextflow Tower)
#### Lyra
You are only allowed to monitor jobs using Nextflow Tower on Lyra and that does not require running the Tower Agent.



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