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Update how_to_setup.md
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mantczakaus authored Nov 23, 2023
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Expand Up @@ -28,7 +28,7 @@ You are only allowed to monitor jobs using Nextflow Tower on Lyra and that does

### Add Personal Access Token in GitHub
#### Gadi and Setonix (Nextflow Tower)
GitHub is very restrictive about the number of times you can make [API requests](https://docs.github.com/en/rest/overview/rate-limits-for-the-rest-api?apiVersion=2022-11-28) (it happens when you execute a pipeline in Nextflow Tower directly from GitHub repository). You can increase that number when personal access token is used - that's why we recommend creating one and adding it into credentials (below). Instructions on how to generate the authentication token can be found in the GitHub documentation: [Managing your personal access tokens] (https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens).
GitHub is very restrictive about the number of times you can make [API requests](https://docs.github.com/en/rest/overview/rate-limits-for-the-rest-api?apiVersion=2022-11-28) (it happens when you execute a pipeline in Nextflow Tower directly from GitHub repository). You can increase that number when personal access token is used - that's why we recommend creating one and adding it into credentials (below). Instructions on how to generate the authentication token can be found in the GitHub documentation: [Managing your personal access tokens](https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens).
#### Lyra
Not applicable.

Expand All @@ -37,7 +37,7 @@ Not applicable.
#### Gadi and Setonix (Nextflow Tower)

#### Lyra
No need to create
Not applicable.

### Add a Compute Environment
### Add a pipeline
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