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Thermal Imaging Theory
The emissivitiy is the efficiency with which the surface emits thermal radiation. If only half the heat of the body is radiated then logically we have to double the measured value to get the temperature. This emissivitiy value is expressed as a number between 0 and 1, where 1 is equivilent to 100%.
In practice an approximation is normally the best that can be achieved. Thermoworks provides an emissivity table which provides approximations for a range of surfaces.
Skin has an emissivity of 0.98.
http://www.thermoworks.com/emissivity_table.html
This corrects for the differing sensitivity of different pixels.
http://nuc.die.udec.cl/?page_id=18
Flat field correction is one non uniformity correction technique. The images taken with the shutter closed are designed to be used for flat field correction. This technique should also remove any static errors located under the shutter.
https://en.wikipedia.org/wiki/Flat-field_correction
As the array heats the behaviour of each pixel of the microbolometer changes in its own special way, both due to its own heat and the reflected radiation from other portions of the element. Ongoing calibration must be peformed to correct for this.
MSX (Proprietary FLIR) uses a standard camera to edge detect and greatly increase apparent quality
http://www.wired.com/2014/08/a-review-of-the-iphone-infrared-camera-the-flir-one/
Deblurring images can add much detail
http://www.eevblog.com/forum/testgear/yet-another-cheap-thermal-imager-incoming/msg557758/#msg557758
Combine all values into 10 degree bins before display reduces visible noise, trick used by FLIR
http://www.eevblog.com/forum/testgear/yet-another-cheap-thermal-imager-incoming/msg557156/#msg557156
http://www.eevblog.com/forum/testgear/yet-another-cheap-thermal-imager-incoming/msg538947/#msg538947
Mask out stuck (unchanging) pixels - replace with averaged neighbours Adjust gain of unusual column/row to match neighbours
http://www.eevblog.com/forum/testgear/yet-another-cheap-thermal-imager-incoming/msg538736/#msg538736
Read a write up of thermal imaging basics, emissitivity etc. FLIR manual should have a chapter