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diff --git a/_modules/pySC/core/beam.html b/_modules/pySC/core/beam.html
@@ -11,11 +11,11 @@
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@@ -166,7 +166,7 @@ <h1>Source code for pySC.core.beam</h1><div class="highlight"><pre>
 
     <span class="c1"># mean_bpm_orbits_3d is 3D (dim, BPM, turn)</span>
     <span class="n">mean_bpm_orbits_3d</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">average</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">bpm_orbits_4d</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">bpm_orbits_4d</span><span class="p">)),</span>
-                                    <span class="n">weights</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">bpm_sums_4d</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">bpm_sums_4d</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span>
+                                    <span class="n">weights</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">bpm_sums_4d</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">bpm_sums_4d</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span><span class="o">.</span><span class="n">filled</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">)</span>
     <span class="c1"># averaging &quot;charge&quot; also when the beam did not reach the location</span>
     <span class="n">mean_bpm_sums_3d</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nansum</span><span class="p">(</span><span class="n">bpm_sums_4d</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span> <span class="o">/</span> <span class="n">SC</span><span class="o">.</span><span class="n">INJ</span><span class="o">.</span><span class="n">nShots</span>
 
@@ -175,13 +175,13 @@ <h1>Source code for pySC.core.beam</h1><div class="highlight"><pre>
     <span class="k">if</span> <span class="n">SC</span><span class="o">.</span><span class="n">INJ</span><span class="o">.</span><span class="n">trackMode</span> <span class="o">==</span> <span class="n">TRACK_PORB</span><span class="p">:</span>   <span class="c1"># ORB averaged over low amount of turns</span>
         <span class="n">mean_bpm_orbits_3d</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">average</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">mean_bpm_orbits_3d</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">mean_bpm_orbits_3d</span><span class="p">)),</span>
                                         <span class="n">weights</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">mean_bpm_sums_3d</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">mean_bpm_sums_3d</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span>
-                                        <span class="n">keepdims</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+                                        <span class="n">keepdims</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span><span class="o">.</span><span class="n">filled</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">)</span>
         <span class="n">mean_bpm_sums_3d</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nansum</span><span class="p">(</span><span class="n">mean_bpm_sums_3d</span><span class="p">,</span> <span class="n">axis</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">keepdims</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span> <span class="o">/</span> <span class="n">SC</span><span class="o">.</span><span class="n">INJ</span><span class="o">.</span><span class="n">nTurns</span>
     <span class="k">if</span> <span class="n">calculate_errors</span> <span class="ow">and</span> <span class="n">SC</span><span class="o">.</span><span class="n">INJ</span><span class="o">.</span><span class="n">trackMode</span> <span class="o">==</span> <span class="n">TRACK_TBT</span><span class="p">:</span>
         <span class="n">bpm_orbits_4d</span><span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">sum</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">bpm_orbits_4d</span><span class="p">),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">3</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
         <span class="n">squared_orbit_diffs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">square</span><span class="p">(</span><span class="n">bpm_orbits_4d</span> <span class="o">-</span> <span class="n">mean_bpm_orbits_3d</span><span class="p">)</span>
-        <span class="n">err_bpm_orbits_3d</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">average</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">squared_orbit_diffs</span><span class="p">),</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">bpm_orbits_4d</span><span class="p">),</span>
-                                   <span class="n">weights</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">bpm_sums_4d</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">bpm_orbits_4d</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">3</span><span class="p">))</span>
+        <span class="n">err_bpm_orbits_3d</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">average</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">squared_orbit_diffs</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">bpm_orbits_4d</span><span class="p">)),</span>
+                                   <span class="n">weights</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">ma</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">bpm_sums_4d</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">bpm_orbits_4d</span><span class="p">)),</span> <span class="n">axis</span><span class="o">=</span><span class="mi">3</span><span class="p">))</span><span class="o">.</span><span class="n">filled</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">)</span>
         <span class="c1"># Organising the array 2 x (nturns x nbpms) sorted by &quot;arrival time&quot;</span>
         <span class="c1"># TODO keep in 3D when the response matrices are changed</span>
         <span class="k">return</span> <span class="p">(</span><span class="n">_reshape_3d_to_matlab_like_2d</span><span class="p">(</span><span class="n">mean_bpm_orbits_3d</span><span class="p">),</span>

diff --git a/_modules/pySC/core/classes.html b/_modules/pySC/core/classes.html
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diff --git a/_modules/pySC/core/simulated_commissioning.html b/_modules/pySC/core/simulated_commissioning.html
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diff --git a/_modules/pySC/correction/rf.html b/_modules/pySC/correction/rf.html
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diff --git a/_modules/pySC/utils/logging_tools.html b/_modules/pySC/utils/logging_tools.html
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diff --git a/_modules/pySC/utils/sc_tools.html b/_modules/pySC/utils/sc_tools.html
@@ -11,11 +11,11 @@
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diff --git a/_static/basic.css b/_static/basic.css
@@ -670,6 +670,16 @@ dd {
     margin-left: 30px;
 }
 
+.sig dd {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
+.sig dl {
+    margin-top: 0px;
+    margin-bottom: 0px;
+}
+
 dl > dd:last-child,
 dl > dd:last-child > :last-child {
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@@ -738,6 +748,14 @@ abbr, acronym {
     cursor: help;
 }
 
+.translated {
+    background-color: rgba(207, 255, 207, 0.2)
+}
+
+.untranslated {
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+
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 pre {

diff --git a/environment.pickle b/environment.pickle
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