R (extended) #34
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| # Licensed to the Apache Software Foundation (ASF) under one | |
| # or more contributor license agreements. See the NOTICE file | |
| # distributed with this work for additional information | |
| # regarding copyright ownership. The ASF licenses this file | |
| # to you under the Apache License, Version 2.0 (the | |
| # "License"); you may not use this file except in compliance | |
| # with the License. You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, | |
| # software distributed under the License is distributed on an | |
| # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY | |
| # KIND, either express or implied. See the License for the | |
| # specific language governing permissions and limitations | |
| # under the License. | |
| name: R (extended) | |
| # Runs weekly. This catches changes that happen because of | |
| # dependency updates and catches some of the more infrequent/obscure | |
| # changes that affect the R package. | |
| on: | |
| # Also can trigger manually (e.g., if release is upcoming, etc.) | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '5 0 * * 0' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - ".github/workflows/r-extended.yml" | |
| permissions: | |
| contents: read | |
| jobs: | |
| # Runs R CMD check on the same platforms/R versions CRAN does | |
| cran: | |
| strategy: | |
| matrix: | |
| rversion: [oldrel, release, devel] | |
| os: [macOS, windows, ubuntu] | |
| pkg: [adbcdrivermanager, adbcsqlite, adbcpostgresql, adbcflightsql, adbcsnowflake, adbcbigquery] | |
| fail-fast: false | |
| uses: ./.github/workflows/r-check.yml | |
| with: | |
| os: ${{ matrix.os }} | |
| pkg: ${{ matrix.pkg }} | |
| rversion: ${{ matrix.rversion }} | |
| secrets: | |
| SNOWFLAKE_URI: ${{ secrets.SNOWFLAKE_URI }} | |
| # Check older versions of R on Linux. This catches accidental use of newer R functions. | |
| rversions: | |
| strategy: | |
| matrix: | |
| rversion: ["3.6", "4.0", "4.1"] | |
| os: [ubuntu] | |
| pkg: [adbcdrivermanager, adbcsqlite, adbcpostgresql, adbcflightsql, adbcsnowflake, adbcbigquery] | |
| fail-fast: false | |
| uses: ./.github/workflows/r-check.yml | |
| with: | |
| os: ${{ matrix.os }} | |
| pkg: ${{ matrix.pkg }} | |
| rversion: ${{ matrix.rversion }} | |
| secrets: | |
| SNOWFLAKE_URI: ${{ secrets.SNOWFLAKE_URI }} | |
| # Checks on older verions of R on Windows. The Windows build system changed | |
| # several times so we need to check packages on every version. Go-based | |
| # drivers aren't supported before 4.2, so we don't check them here. | |
| # We don't need to check R 4.1 because the build system for R 4.0 and R 4.1 | |
| # are the same. | |
| winrversions: | |
| strategy: | |
| matrix: | |
| rversion: ["3.6", "4.0"] | |
| os: [windows] | |
| pkg: [adbcdrivermanager, adbcsqlite, adbcpostgresql] | |
| fail-fast: false | |
| uses: ./.github/workflows/r-check.yml | |
| with: | |
| os: ${{ matrix.os }} | |
| pkg: ${{ matrix.pkg }} | |
| rversion: ${{ matrix.rversion }} | |
| secrets: | |
| SNOWFLAKE_URI: ${{ secrets.SNOWFLAKE_URI }} | |
| # Runs tests with valgrind. Go does not support valgrind, so we don't run | |
| # those tests here. | |
| valgrind: | |
| name: "valgrind (${{ matrix.pkg }})" | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| matrix: | |
| rversion: [release] | |
| os: [ubuntu] | |
| pkg: [adbcdrivermanager, adbcsqlite, adbcpostgresql] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| rversion: ${{ matrix.rversion }} | |
| use-public-rspm: true | |
| - name: Install valgrind | |
| run: | | |
| sudo apt-get install -y valgrind | |
| # Usually, pak::pkg_install() will run bootstrap.R if it is included and is declared; | |
| # however, this doesn't work for local:: for some reason (which is what | |
| # setup-r-dependencies uses under the hood) | |
| - name: Bootstrap R Package | |
| run: | | |
| pushd r/adbcdrivermanager | |
| R -e 'if (!requireNamespace("nanoarrow", quietly = TRUE)) install.packages("nanoarrow", repos = "https://cloud.r-project.org/")' | |
| R CMD INSTALL . --preclean | |
| popd | |
| pushd "r/${{ matrix.pkg }}" | |
| Rscript bootstrap.R | |
| popd | |
| shell: bash | |
| - uses: r-lib/actions/setup-r-dependencies@f4937e0dc26f9b99c969cd3e4ca943b576e7f991 | |
| with: | |
| working-directory: r/${{ matrix.pkg }} | |
| - name: Start postgres test database | |
| if: matrix.pkg == 'adbcpostgresql' | |
| run: | | |
| cd r/adbcpostgresql | |
| docker compose up --detach postgres-test | |
| ADBC_POSTGRESQL_TEST_URI="postgresql://localhost:5432/postgres?user=postgres&password=password" | |
| echo "ADBC_POSTGRESQL_TEST_URI=${ADBC_POSTGRESQL_TEST_URI}" >> $GITHUB_ENV | |
| - name: Run devtools::test() with valgrind | |
| run: | | |
| cd r/${{ matrix.pkg }} | |
| R -d "valgrind --tool=memcheck --leak-check=full --suppressions=../valgrind.supp --error-exitcode=1" -e "testthat::test_local()" > valgrind.out 2>&1 | |
| - name: Show output | |
| if: always() | |
| run: | | |
| cd r/${{ matrix.pkg }} | |
| cat valgrind.out | |
| - name: Shutdown docker compose services | |
| if: always() | |
| run: | | |
| docker compose down |