Updated pargen.utils.load_data to use LH5Iterator and field_mask to be more memory efficient #2124
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: pygama | |
on: | |
workflow_dispatch: | |
pull_request: | |
push: | |
branches: | |
- main | |
- "releases/**" | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
env: | |
FORCE_COLOR: 3 | |
TQDM_DISABLE: yes_please | |
jobs: | |
build-and-test: | |
name: Test pygama with Python | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.9", "3.10", "3.11"] | |
os: [ubuntu-latest, macOS-13] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Get dependencies and install the package | |
run: | | |
python -m pip install --upgrade pip wheel setuptools | |
python -m pip install --upgrade .[test] | |
- name: Run unit tests | |
run: | | |
python -m pytest | |
test-coverage: | |
name: Calculate and upload test coverage | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 2 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Generate Report | |
run: | | |
python -m pip install --upgrade pip wheel setuptools | |
python -m pip install --upgrade .[test] | |
python -m pytest --cov=pygama --cov-report=xml | |
- name: Upload Coverage to codecov.io | |
uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
fail_ci_if_error: false | |
test-docs: | |
name: Build documentation | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Setup build environment | |
run: | | |
sudo apt-get install -y pandoc | |
python -m pip install --upgrade pip wheel setuptools | |
python -m pip install --upgrade .[all] | |
- name: Build docs for current ref | |
run: | | |
cd docs | |
make clean | |
make |