Uses pedigree information to filter STRling output to find de novo variants Will need a ped file as well as STRling output. For peddy library, must be in python version 3.7 or earlier.
#strling-denovo-threshold150 The same as above, except in the STRling output the threshold for being classified as a true novel amplification is a difference greater than 150 compared to both parents.
This repository also holds various pieces of code I have used for data analysis and visualization.
conda env create environment.yml
conda activate strling-denovo