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update odgi
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@kojix2
kojix2 committed Aug 21, 2024
1 parent d8a222e commit 5346733
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion odgi
Submodule odgi updated 48 files
+1 −1 .github/workflows/build_and_test_on_push.yml
+1 −1 .github/workflows/publish_docker_hub.yml
+4 −1 .gitignore
+35 −0 .readthedocs.yaml
+8 −0 README.md
+5 −0 default.nix
+1 −1 deps/pybind11
+3 −3 docs/conf.py
+ − docs/img/DRB1-3123.du.png
+ − docs/img/DRB1-3123.png
+ − docs/img/DRB1-3123.z.png
+ − docs/img/DRB1-3123_sorted.U1000.png
+ − docs/img/DRB1-3123_sorted.j10000.png
+ − docs/img/DRB1-3123_sorted.x2.png
+ − docs/img/DRB1-3123_sorting_layouting.png
+ − docs/img/LPA.b.png
+ − docs/img/LPA.bm.VNTRs.png
+ − docs/img/LPA.bm.png
+1 −1 docs/index.rst
+1 −0 docs/requirements.txt
+1 −1 docs/rst/commands/odgi_crush.rst
+2 −3 docs/rst/commands/odgi_sort.rst
+3 −3 docs/rst/multiqc.rst
+3 −3 docs/rst/quick_start.rst
+1 −1 docs/rst/tutorials/exploratory_analysis.rst
+108 −4 docs/rst/tutorials/sort_layout.rst
+40 −0 odgi.nix
+33 −0 src/algorithms/atomic_image.cpp
+6 −0 src/algorithms/atomic_image.hpp
+197 −11 src/algorithms/draw.cpp
+6 −1 src/algorithms/draw.hpp
+50 −10 src/algorithms/flip.cpp
+2 −1 src/algorithms/flip.hpp
+1 −1 src/algorithms/untangle.cpp
+9 −0 src/position.hpp
+1 −0 src/pythonmodule.cpp
+1 −1 src/subcommand/crush_main.cpp
+9 −1 src/subcommand/depth_main.cpp
+27 −11 src/subcommand/draw_main.cpp
+11 −0 src/subcommand/extract_main.cpp
+12 −5 src/subcommand/flip_main.cpp
+292 −18 src/subcommand/paths_main.cpp
+6 −4 src/subcommand/pav_main.cpp
+19 −0 src/subcommand/position_main.cpp
+24 −5 src/subcommand/stats_main.cpp
+13 −8 src/subcommand/viz_main.cpp
+23 −0 src/utils.cpp
+1 −0 src/utils.hpp

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