Dolphyn

This repository contains the software (Python package) and analysis scripts described in:

• Liebhoff, AM. et al. Efficient antibody profiling of the human gut phageome with Dolphyn. Nature communications (2024).

The Manuscript Analyses folder contains the collection of scripts run for obtaining the plots in the figures.

The data folder contains the collection of data used in the publication
(except the Public Epitope Dataset, which can be found on Zenodo: , download PEDS ).

The dolphyn folder contains the Python package.

An example script for using the package is given in the Dolphyn_library_design Jupyter notebook.