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Allows general set comparisons with a focus on sets of genomic locations (ChIP-seq peaks primarily). The includes standard visualizations such as venn and euler diagrams but more powerfully of genomic signal pulled from bigwig files.

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jrboyd/seqsetvis

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See the vignette for an overview of most common functions and usage examples.

Installation

From Bioconductor

## try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("seqsetvis")

From github

One dependency from bioconductor isn't getting installed automatically

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("GenomeInfoDbData")

Install devtools if needed

if(!require(devtools)){
    install.packages("devtools")    
}

Install seqsetvis from github

devtools::install_github("jrboyd/seqsetvis")

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Allows general set comparisons with a focus on sets of genomic locations (ChIP-seq peaks primarily). The includes standard visualizations such as venn and euler diagrams but more powerfully of genomic signal pulled from bigwig files.

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