Initial commit

jmzhang1911 · Apr 28, 2023 · 17f5aad · 17f5aad
commit 17f5aad
Show file tree

Hide file tree

Showing 153 changed files with 2,076 additions and 0 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/.gitattributes b/.gitattributes
@@ -0,0 +1,2 @@
+# Auto detect text files and perform LF normalization
+* text=auto
diff --git a/.idea/.gitignore b/.idea/.gitignore
diff --git a/.idea/bioinfor_tools.iml b/.idea/bioinfor_tools.iml
diff --git a/.idea/inspectionProfiles/Project_Default.xml b/.idea/inspectionProfiles/Project_Default.xml
diff --git a/.idea/inspectionProfiles/profiles_settings.xml b/.idea/inspectionProfiles/profiles_settings.xml
diff --git a/.idea/misc.xml b/.idea/misc.xml
diff --git a/.idea/modules.xml b/.idea/modules.xml
diff --git a/README.md b/README.md
@@ -0,0 +1,2 @@
+# bioinfor_tools
+
diff --git a/bioinfor_tools.egg-info/PKG-INFO b/bioinfor_tools.egg-info/PKG-INFO
@@ -0,0 +1,12 @@
+Metadata-Version: 2.1
+Name: bioinfor-tools
+Version: 0.1
+Summary: UNKNOWN
+Home-page: UNKNOWN
+Author: jmzhang
+Author-email: [email protected]
+License: UNKNOWN
+Platform: UNKNOWN
+
+UNKNOWN
+
diff --git a/bioinfor_tools.egg-info/SOURCES.txt b/bioinfor_tools.egg-info/SOURCES.txt
@@ -0,0 +1,9 @@
+setup.py
+bioinfor_tools/__init__.py
+bioinfor_tools/_bio_basic.py
+bioinfor_tools/_cmd_runner.py
+bioinfor_tools/_utils.py
+bioinfor_tools.egg-info/PKG-INFO
+bioinfor_tools.egg-info/SOURCES.txt
+bioinfor_tools.egg-info/dependency_links.txt
+bioinfor_tools.egg-info/top_level.txt
diff --git a/bioinfor_tools.egg-info/dependency_links.txt b/bioinfor_tools.egg-info/dependency_links.txt
@@ -0,0 +1 @@
+
diff --git a/bioinfor_tools.egg-info/top_level.txt b/bioinfor_tools.egg-info/top_level.txt
@@ -0,0 +1 @@
+bioinfor_tools
diff --git a/bioinfor_tools/__init__.py b/bioinfor_tools/__init__.py
@@ -0,0 +1,19 @@
+#!/share/nas2/genome/biosoft/Python//3.7.3/bin/python3
+# -*- coding: utf-8 -*-
+# @Time : 2023/4/28 09:13
+# @Author : jmzhang
+# @Email : [email protected]
+
+import logging
+
+FORMAT = '%(asctime)s %(message)s'
+logging.basicConfig(level=logging.INFO, format=FORMAT, datefmt='%Y-%m-%d %H:%M:%S')
+
+__version__ = 'v0.1 beta'
+
+from ._bio_basic import BioBasic
+from ._cmd_runner import CmdRunner as __CmdRunner
+from ._utils import *
+
+cmd_wrapper = __CmdRunner.cmd_wrapper
+cmd = __CmdRunner.cmd
diff --git a/bioinfor_tools/__pycache__/__init__.cpython-39.pyc b/bioinfor_tools/__pycache__/__init__.cpython-39.pyc
diff --git a/bioinfor_tools/__pycache__/_bio_basic.cpython-39.pyc b/bioinfor_tools/__pycache__/_bio_basic.cpython-39.pyc
diff --git a/bioinfor_tools/__pycache__/_cmd_runner.cpython-39.pyc b/bioinfor_tools/__pycache__/_cmd_runner.cpython-39.pyc
diff --git a/bioinfor_tools/__pycache__/_utils.cpython-39.pyc b/bioinfor_tools/__pycache__/_utils.cpython-39.pyc
diff --git a/bioinfor_tools/_bio_basic.py b/bioinfor_tools/_bio_basic.py
@@ -0,0 +1,20 @@
+from pathlib import Path
+
+
+class BioBasic:
+    """
+    - basic functions and property
+        - read cfg
+        - mkdir dir
+        - module property
+    """
+    # 主路径位置
+    BASE_DIR = Path(__file__).absolute().parent.parent
+    # 日志路径
+    LOGGING_SUMMARY = BASE_DIR / 'logging_summary.txt'
+
+    def __init__(self, module):
+        # 模块所在的绝对父目录
+        self._module_dir = Path(module).absolute().parent
+        # 模块的名称
+        self._module_name = Path(module).name
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		# Auto detect text files and perform LF normalization
		* text=auto