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Add legacy SCAN2 version (0.9) and 17 run scripts for subjects in thi…
…s paper
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Joe Luquette
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| #!/bin/bash | ||
|
|
||
| if [[ $target_platform =~ linux.* ]]; then | ||
| export DISABLE_AUTOBREW=1 | ||
| mv DESCRIPTION DESCRIPTION.old | ||
| grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION | ||
| $R CMD INSTALL --build . | ||
| else | ||
| mkdir -p $PREFIX/lib/R/library/scansnv | ||
| mv * $PREFIX/lib/R/library/scansnv | ||
| fi |
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| package: | ||
| name: r-scansnv | ||
| version: '0.1' | ||
|
|
||
| source: | ||
| git_url: https://github.com/parklab/r-scansnv.git | ||
|
|
||
| build: | ||
| merge_build_host: True # [win] | ||
| # If this is a new build for the same version, increment the build number. | ||
| number: 0 | ||
| # This is required to make R link correctly on Linux. | ||
| rpaths: | ||
| - lib/R/lib/ | ||
| - lib/ | ||
|
|
||
| requirements: | ||
| build: | ||
| - {{ compiler('c') }} # [not win] | ||
| - {{ compiler('cxx') }} # [not win] | ||
| - toolchain # [win] | ||
| - filesystem # [win] | ||
| - make | ||
| - sed # [win] | ||
| - coreutils # [win] | ||
| - zip # [win] | ||
| host: | ||
| - r-base | ||
| - openblas 0.3.4 ha44fe06_0 | ||
| run: | ||
| - r-base | ||
| - openblas 0.3.4 ha44fe06_0 | ||
|
|
||
| test: | ||
| commands: | ||
| - $R -e "library('scansnv')" # [not win] | ||
| - "\"%R%\" -e \"library('scansnv')\"" # [win] | ||
|
|
||
| about: | ||
| home: https://github.com/parklab/r-scansnv | ||
| summary: Single cell somatic SNV genotyper. |
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| mkdir -p $PREFIX/bin | ||
| cp bin/scansnv $PREFIX/bin | ||
| mkdir -p $PREFIX/lib/scansnv | ||
| cp scripts/*.{R,sh,py} $PREFIX/lib/scansnv/ | ||
| cp snakemake/Snakefile $PREFIX/lib/scansnv/ | ||
| cp snakemake/cluster.yaml $PREFIX/lib/scansnv/ |
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| bin/scansnv |
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