Welcome to the GCN4R package, which is the first R package to allow custom fitting of Graph Neural Networks to social/biological network data. We are currently updating our documentation, but for now you can find a complete description of our work here: https://www.biorxiv.org/content/10.1101/2020.11.02.364935v1
To install:
First, install the python package:
pip install git+https://github.com/jlevy44/GCN4R
Install additional python dependencies:
install_gcn4r_dependencies ${TORCH_VERSION} ${CUDA_VERSION}
With TORCH_VERSION and CUDA_VERSION set according to https://pytorch-geometric.readthedocs.io/en/latest/notes/installation.html. Then, install the R package:
devtools::install_github("jlevy44/gcn4r")
Then, either read our tutorial paper or check out our R Markdown tutorial here to get started.
