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jinghuazhao · May 4, 2024 · 624f99f · 624f99f
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diff --git a/docs/csd3-gcc11.sh b/docs/csd3-gcc11.sh
@@ -2,17 +2,20 @@
 
 module load gcc/11 geos-3.6.2-gcc-5.4.0-vejexvy gettext-0.19.8.1-gcc-5.4.0-5iqkv5z pcre2-10.20-gcc-5.4.0-tcuhtrb texlive
 module load image-magick-7.0.5-9-gcc-5.4.0-d4lemcc
-module load ceuadmin/glpk/4.57 ceuadmin/icu/70.1
+module load ceuadmin/brotli/1.0.9 ceuadmin/glpk/4.57 ceuadmin/icu/70.1 ceuadmin/jq/1.6 protobuf-3.4.0-gcc-5.4.0-zkpendv
+module load ceuadmin/NLopt/2.7.1
 
 export version=4.4.0
 IFS=\. read major minor1 minor2 <<<${version}
-export prefix=/rds/project/jmmh2/rds-jmmh2-public_databases/software
-export R_LIBS=${prefix}/R-gcc11
+export rds=/rds/project/jmmh2/rds-jmmh2-public_databases/software
+export prefix=${CEUADMIN}/R
+export dest=${version}-gcc11
+export R_LIBS=${rds}/R-gcc11
 cd ${prefix}
-mkdir R-${version}-gcc11
+mkdir ${dest}
 wget -qO- https://cran.r-project.org/src/base/R-${major}/R-${version}.tar.gz | \
-tar xvfz - -C R-${version}-gcc11 --strip-components=1
-cd R-${version}-gcc11
-./configure --prefix=${prefix}/${version}-gcc11 --with-pcre2 --enable-R-shlib
+tar xvfz - -C ${dest} --strip-components=1
+cd ${dest}
+./configure --prefix=${prefix}/${dest} --with-pcre2 --enable-R-shlib
 make
 make install
diff --git a/docs/csd3-icelake.sh b/docs/csd3-icelake.sh
@@ -7,17 +7,17 @@ module load ceuadmin/nettle/2.7.1 texlive
 
 export version=4.4.0
 IFS=\. read major minor1 minor2 <<<${version}
-export prefix=/rds/project/jmmh2/rds-jmmh2-public_databases/software
-export R_LIBS=${prefix}/R-icelake
+export rds=/rds/project/jmmh2/rds-jmmh2-public_databases/software
+export prefix=$CEUADMIN/R
+export dest=${version}-icelake
+export R_LIBS=${rds}/R-icelake
 cd ${prefix}
-mkdir R-${version}-icelake
+mkdir ${dest}
 wget -qO- https://cran.r-project.org/src/base/R-${major}/R-${version}.tar.gz | \
-tar xvfz - -C R-${version}-icelake --strip-components=1
-cd R-${version}-icelake
-export prefix=/usr/local/Cluster-Apps/ceuadmin/R
-./configure --prefix=${prefix}/${version}-icelake --with-pcre2 --enable-R-shlib
+tar xvfz - -C ${dest} --strip-components=1
+cd ${dest}
+./configure --prefix=${prefix}/${dest} --with-pcre2 --enable-R-shlib
 make
-make install
 
 function legacy()
 {

diff --git a/docs/csd3.sh b/docs/csd3.sh
@@ -3,18 +3,21 @@
 module load gcc/9 geos-3.6.2-gcc-5.4.0-vejexvy gettext-0.19.8.1-gcc-5.4.0-5iqkv5z pcre2-10.20-gcc-5.4.0-tcuhtrb texlive
 module load image-magick-7.0.5-9-gcc-5.4.0-d4lemcc
 module load ceuadmin/brotli/1.0.9 ceuadmin/glpk/4.57 ceuadmin/icu/70.1 ceuadmin/jq/1.6 protobuf-3.4.0-gcc-5.4.0-zkpendv
+module load ceuadmin/NLopt/2.7.1
 
-export prefix=/rds/project/jmmh2/rds-jmmh2-public_databases/software
-export R_LIBS=${prefix}/R
-cd ${prefix}
 export version=4.4.0
 IFS=\. read major minor1 minor2 <<<${version}
+export rds=/rds/project/jmmh2/rds-jmmh2-public_databases/software
+export prefix=$CEUADMIN/R
+export dest=${version}
+export R_LIBS=${rds}/R
+cd ${prefix}
+mkdir ${dest}
 wget -qO- https://cran.r-project.org/src/base/R-${major}/R-${version}.tar.gz | \
-tar xvfz -
-cd R-${version}
-./configure --prefix=${prefix}/${version} --with-pcre2 --enable-R-shlib
+tar xvfz - -C ${dest} --strip-components=1
+cd ${dest}
+./configure --prefix=${prefix}/${dest} --with-pcre2 --enable-R-shlib
 make
-make install
 Rscript -e 'update.packages(checkBuilt=TRUE,ask=FALSE)'
 
 function pre_4.3.3()