vignettes

jinghuazhao · Aug 30, 2024 · 12ea9ac · 12ea9ac
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diff --git a/vignettes/gap-manual.pdf b/vignettes/gap-manual.pdf
diff --git a/vignettes/gap.html b/vignettes/gap.html
@@ -5606,10 +5606,10 @@ <h1>Appendix</h1>
 #&gt; tscc : function (model, GRR, p1, n1, n2, M, alpha.genome, pi.samples, pi.markers, K)  
 #&gt; whscore : function (allele, type)  
 #&gt; xy : function (x)
-#&gt;      Package LibPath                                                       Item   Title                             
-#&gt; [1,] &quot;gap&quot;   &quot;/rds/user/jhz22/hpc-work/work/RtmpQW4rn1/Rinst5dc962e8c595c&quot; &quot;hg18&quot; &quot;Chromosomal lengths for build 36&quot;
-#&gt; [2,] &quot;gap&quot;   &quot;/rds/user/jhz22/hpc-work/work/RtmpQW4rn1/Rinst5dc962e8c595c&quot; &quot;hg19&quot; &quot;Chromosomal lengths for build 37&quot;
-#&gt; [3,] &quot;gap&quot;   &quot;/rds/user/jhz22/hpc-work/work/RtmpQW4rn1/Rinst5dc962e8c595c&quot; &quot;hg38&quot; &quot;Chromosomal lengths for build 38&quot;</code></pre>
+#&gt;      Package LibPath                                                        Item   Title                             
+#&gt; [1,] &quot;gap&quot;   &quot;/rds/user/jhz22/hpc-work/work/RtmpcOzqwx/Rinst2fb82136a4edc8&quot; &quot;hg18&quot; &quot;Chromosomal lengths for build 36&quot;
+#&gt; [2,] &quot;gap&quot;   &quot;/rds/user/jhz22/hpc-work/work/RtmpcOzqwx/Rinst2fb82136a4edc8&quot; &quot;hg19&quot; &quot;Chromosomal lengths for build 37&quot;
+#&gt; [3,] &quot;gap&quot;   &quot;/rds/user/jhz22/hpc-work/work/RtmpcOzqwx/Rinst2fb82136a4edc8&quot; &quot;hg38&quot; &quot;Chromosomal lengths for build 38&quot;</code></pre>
 </div>
 <div class="footnotes footnotes-end-of-document">
 <hr />

diff --git a/vignettes/jss.pdf b/vignettes/jss.pdf